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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.63862 (6 seq.)
>WENV180350516
OBLQ010002001
[OBLQ] soil metagenome; soil
123
210
+
Ser
GGA
[ENA]
¡û
>WENV183616642
OOED01111384
[OOED] marine metagenome; seawater
259
346
+
Ser
GGA
[ENA]
¡û
>WENV170377111
CETU01131017
[CETU] marine metagenome genome assembly TARA_142_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
440
527
+
Ser
GGA
[ENA]
¡û
>WENV170765666
LWDU01038915
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
8364
8277
-
Ser
GGA
[ENA]
¡û
>WENV170765728
LWDU01039182
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
6957
7044
+
Ser
GGA
[ENA]
¡û
>WENV170765800
LWDU01039415
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
44009
44096
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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