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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.64905 (74 seq.)
>W131095869
AOPO01000012
Gammaproteobacteria
Halomonas titanicae BH1 [AOPO]
92622
92536
-
Leu
TAA
[ENA]
¡û
>W141252193
CBRE010000102
Gammaproteobacteria
Halomonas sp. A3H3 [CBRE]
91294
91208
-
Leu
TAA
[ENA]
¡û
>WENV182547952
OJBU01004105
[OJBU] seawater metagenome; Sea water
536
450
-
Leu
TAA
[ENA]
¡û
>WENV182548743
OJBX01000059
[OJBX] seawater metagenome; Sea water
134
220
+
Leu
TAA
[ENA]
¡û
>WENV182572645
OJFM01000234
[OJFM] seawater metagenome; Sea water
3813
3899
+
Leu
TAA
[ENA]
¡û
>WENV182575856
OJFX01000007
[OJFX] seawater metagenome; Sea water
38743
38657
-
Leu
TAA
[ENA]
¡û
>WENV182585218
OJHH01003711
[OJHH] seawater metagenome; Sea water
1662
1748
+
Leu
TAA
[ENA]
¡û
>WENV182588598
OJHV01001015
[OJHV] seawater metagenome; Sea water
1019
1105
+
Leu
TAA
[ENA]
¡û
>WENV182591149
OJIL01000049
[OJIL] seawater metagenome; Sea water
14899
14985
+
Leu
TAA
[ENA]
¡û
>WENV182591452
OJIO01000087
[OJIO] seawater metagenome; Sea water
55086
55172
+
Leu
TAA
[ENA]
¡û
>W141275912
JADJ01000019
Gammaproteobacteria
Halomonas sp. 23_GOM-1509m [JADJ]
93417
93331
-
Leu
TAA
[ENA]
¡û
>WENV170014238
AXCI01002626
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
229
315
+
Leu
TAA
[ENA]
¡û
>WENV170014261
AXCI01003370
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
10473
10387
-
Leu
TAA
[ENA]
¡û
>WENV170112379
CEGE01004282
[CEGE] microbial mat metagenome; grass silage
136
222
+
Leu
TAA
[ENA]
¡û
>WENV170112475
CEGF01000884
[CEGF] microbial mat metagenome; grass silage
60
146
+
Leu
TAA
[ENA]
¡û
>WENV170112653
CEGF01009125
[CEGF] microbial mat metagenome; grass silage
1814
1900
+
Leu
TAA
[ENA]
¡û
>WENV170672368
LAZR01000081
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
120093
120007
-
Leu
TAA
[ENA]
¡û
>WENV170692487
LGOV01009707
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
22331
22245
-
Leu
TAA
[ENA]
¡û
>WENV170695948
LGVE01190462
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1597
1683
+
Leu
TAA
[ENA]
¡û
>WENV170699905
LGVF01679258
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1592
1678
+
Leu
TAA
[ENA]
¡û
>C191007749
AP019416
Gammaproteobacteria
Halomonas olivaria TYRC17 [AP019416]
2974710
2974796
+
Leu
TAA
-
¡û
>C191165488
CP039374
Gammaproteobacteria
Halomonas titanicae ANRCS81 [CP039374]
3741559
3741473
-
Leu
TAA
-
¡û
>W141564674
JIAY01000017
Gammaproteobacteria
Halomonas sp. 19A_GOM-1509m [JIAY]
93424
93338
-
Leu
TAA
[ENA]
¡û
>W141754482
JNVS01000079
Gammaproteobacteria
Halomonas sp. KO116 [JNVS]
361178
361264
+
Leu
TAA
[ENA]
¡û
>W141818904
JQLV01000002
Gammaproteobacteria
Halomonas sp. TG39a [JQLV]
60233
60319
+
Leu
TAA
[ENA]
¡û
>W1910006950
BBQX01000022
Gammaproteobacteria
Halomonas sp. MBEE15 [BBQX]
48008
48094
+
Leu
TAA
[ENA]
¡û
>W1911148585
NPEY01000015
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
17170
17084
-
Leu
TAA
[ENA]
¡û
>W1911203568
NRGW01000001
Gammaproteobacteria
Halomonas sp. JB37 [NRGW]
1895720
1895634
-
Leu
TAA
[ENA]
¡û
>W1810156497
PJBI01000053
Gammaproteobacteria
Halomonas sp. Choline-3u-9 [PJBI]
48041
48127
+
Leu
TAA
[ENA]
¡û
>W1810157232
PJBT01000191
Gammaproteobacteria
Halomonas sp. MES3-P3E [PJBT]
164715
164629
-
Leu
TAA
[ENA]
¡û
>W1810722074
QNTU01000015
Gammaproteobacteria
Halomonas sulfidaeris SST4 [QNTU]
30212
30126
-
Leu
TAA
[ENA]
¡û
>W1810758317
QPIJ01000031
Gammaproteobacteria
Halomonas rituensis TQ8S [QPIJ]
43556
43642
+
Leu
TAA
[ENA]
¡û
>PL201000462
CP040452
Gammaproteobacteria
Halomonas sp. PA16-9 plasmid:p_unnamed1 [CP040452]
1169540
1169626
+
Leu
TAA
[ENA]
¡û
>C151075855
CP011052
Gammaproteobacteria
Halomonas sp. KO116 [CP011052]
3036449
3036535
+
Leu
TAA
[Ensembl]
¡û
>C151104178
LN813019
Gammaproteobacteria
Halomonas sp. R57-5 [LN813019]
2024180
2024094
-
Leu
TAA
-
¡û
>W2010075308
BBQX01000022
Gammaproteobacteria
Halomonas sp. MBEE15 [BBQX]
48008
48094
+
Leu
TAA
[ENA]
¡û
>W2010103627
BJXV01000013
Gammaproteobacteria
Halovibrio variabilis NBRC 102410 [BJXV]
49057
49143
+
Leu
TAA
[ENA]
¡û
>W2010311129
CABWMN010000030
Gammaproteobacteria
Halomonas sp. 98 [CABWMN]
430792
430878
+
Leu
TAA
[ENA]
¡û
>W2010311167
CABWMO010000015
Gammaproteobacteria
Halomonas sp. 153 [CABWMO]
47736
47822
+
Leu
TAA
[ENA]
¡û
>W2010640542
JABWCV010000021
Gammaproteobacteria
Halomonas sp. QX-1 [JABWCV]
23188
23102
-
Leu
TAA
[ENA]
¡û
>W2010643384
JABWTB010000013
Gammaproteobacteria
Halomonas titanicae TAT1 [JABWTB]
65332
65246
-
Leu
TAA
[ENA]
¡û
>W2011021516
NPEY01000015
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
17170
17084
-
Leu
TAA
[ENA]
¡û
>W2011049081
NRGW01000001
Gammaproteobacteria
Halomonas sp. JB37 [NRGW]
1895720
1895634
-
Leu
TAA
[ENA]
¡û
>W2011657159
SOCZ01000014
Gammaproteobacteria
Halomonas alkaliantarctica CRSS [SOCZ]
56567
56653
+
Leu
TAA
[ENA]
¡û
>W2011978530
VCQL01000010
Gammaproteobacteria
Halomonas sp. ATBC28 [VCQL]
182161
182075
-
Leu
TAA
[ENA]
¡û
>W2012094263
VNFE01000009
Gammaproteobacteria
Halomonas titanicae SM1922 [VNFE]
91177
91091
-
Leu
TAA
[ENA]
¡û
>W2012352337
WJPH01000009
Gammaproteobacteria
Halomonas sp. MG34 [WJPH]
48248
48334
+
Leu
TAA
[ENA]
¡û
>W2012434102
WTKP01000003
Gammaproteobacteria
Halomonas sp. ZH2S [WTKP]
365449
365363
-
Leu
TAA
[ENA]
¡û
>W2110098279
CAJFDU010000002
Gammaproteobacteria
Halomonas sp. 113 [CAJFDU]
72465
72551
+
Leu
TAA
[ENA]
¡û
>W2110098398
CAJFDW010000002
Gammaproteobacteria
Halomonas sp. 59 [CAJFDW]
47754
47840
+
Leu
TAA
[ENA]
¡û
>W2110098541
CAJFDZ010000003
Gammaproteobacteria
Halomonas sp. 156 [CAJFDZ]
263975
263889
-
Leu
TAA
[ENA]
¡û
>W2110098733
CAJFEC010000028
Gammaproteobacteria
Halomonas sp. I3 [CAJFEC]
413032
412946
-
Leu
TAA
[ENA]
¡û
>W2110177011
JABFAT010000012
Gammaproteobacteria
Halomonas sp. KRD171 [JABFAT]
153563
153477
-
Leu
TAA
[ENA]
¡û
>W2110188343
JABUYY010000006
Gammaproteobacteria
Halomonas sp. FME64 [JABUYY]
254351
254265
-
Leu
TAA
[ENA]
¡û
>W2110220274
JACIVL010000011
Gammaproteobacteria
Halomonas neptunia DSM 15720 [JACIVL]
93538
93452
-
Leu
TAA
[ENA]
¡û
>W2110546509
JAGGRO010000031
Gammaproteobacteria
Halomonas sp. ISL-56 [JAGGRO]
67057
67143
+
Leu
TAA
[ENA]
¡û
>W2110546530
JAGGRP010000003
Gammaproteobacteria
Halomonas sp. ISL-60 [JAGGRP]
80659
80573
-
Leu
TAA
[ENA]
¡û
>W2110640813
JAHRFY010000008
Gammaproteobacteria
Halomonadaceae bacterium MT13 [JAHRFY]
180412
180326
-
Leu
TAA
[ENA]
¡û
>W2110640833
JAHRFZ010000001
Gammaproteobacteria
Halomonadaceae bacterium MT32 [JAHRFZ]
450733
450647
-
Leu
TAA
[ENA]
¡û
>C211119374
CP059082
Gammaproteobacteria
Halomonas titanicae SOB56 [CP059082]
3026618
3026532
-
Leu
TAA
-
¡û
>C211361201
CP077941
Gammaproteobacteria
Halomonadaceae bacterium MT13 [CP077941]
2207877
2207963
+
Leu
TAA
-
¡û
>C231136142
CP074200
Gammaproteobacteria
Halomonas sp. FeN2 [CP074200]
679935
680021
+
Leu
TAA
-
¡û
>C231226792
CP086344
Gammaproteobacteria
Halomonas profundus 13 [CP086344]
3157867
3157953
+
Leu
TAA
-
¡û
>W2110766690
RRZD01000011
Gammaproteobacteria
Halomonas sp. FME1 [RRZD]
89105
89019
-
Leu
TAA
[ENA]
¡û
>C231534348
CP110535
Gammaproteobacteria
Halomonas sp. BDJS001 [CP110535]
2977226
2977312
+
Leu
TAA
-
¡û
>W2110776108
VOGA01000013
Gammaproteobacteria
Halomonas sp. SBBP1 [VOGA]
88692
88606
-
Leu
TAA
[ENA]
¡û
>C231649489
CP122961
Gammaproteobacteria
Halomonas alkaliantarctica MSP3 [CP122961]
2651864
2651950
+
Leu
TAA
-
¡û
>W2130009108
CAJSTI010003167
Gammaproteobacteria
Halomonas elongata [CAJSTI]
1
87
+
Leu
TAA
[ENA]
¡û
>C241167490
CP054580
Gammaproteobacteria
Vreelandella titanicae GPM3 [CP054580]
2054618
2054704
+
Leu
TAA
-
¡û
>C241295118
CP130610
Gammaproteobacteria
Halomonas sp. HAL1 [CP130610]
2657718
2657804
+
Leu
TAA
-
¡û
>W1511479214
JWHY01000010
Gammaproteobacteria
Halomonas sp. KHS3 [JWHY]
141261
141175
-
Leu
TAA
[ENA]
¡û
>W11180617
AGIB01000085
Gammaproteobacteria
Halomonas sp. HAL1 [AGIB]
51761
51847
+
Leu
TAA
[ENA]
¡û
>W121016446
AGQZ01000046
Gammaproteobacteria
Halomonas boliviensis LC1 [AGQZ]
18180
18266
+
Leu
TAA
[ENA]
¡û
>W1710518724
FNEF01000004
Gammaproteobacteria
Halomonas titanicae DSM 26667 [FNEF]
48778
48864
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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