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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.65074 (116 seq.)
>W1711338338
MBSZ01000037
Gammaproteobacteria
Pseudoalteromonas lipolytica [MBSZ]
13477
13563
+
Leu
TAA
[ENA]
¡û
>W1711338340
MBSZ01000037
Gammaproteobacteria
Pseudoalteromonas lipolytica [MBSZ]
13742
13828
+
Leu
TAA
[ENA]
¡û
>W1711338343
MBSZ01000037
Gammaproteobacteria
Pseudoalteromonas lipolytica [MBSZ]
14077
14163
+
Leu
TAA
[ENA]
¡û
>W131241485
BARX01000007
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
392
306
-
Leu
TAA
[ENA]
¡û
>WENV181322866
OFKV01003581
[OFKV] marine metagenome; sea ice
678
764
+
Leu
TAA
[ENA]
¡û
>W141223845
BAEO01000015
Gammaproteobacteria
Paraglaciecola arctica BSs20135 [BAEO]
89902
89816
-
Leu
TAA
[ENA]
¡û
>W141242111
CAHY01000068
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CAHY]
9010
9096
+
Leu
TAA
[ENA]
¡û
>WENV182542012
OJAV01000277
[OJAV] seawater metagenome; Sea water
20172
20086
-
Leu
TAA
[ENA]
¡û
>WENV182542791
OJAZ01002350
[OJAZ] seawater metagenome; Sea water
4095
4009
-
Leu
TAA
[ENA]
¡û
>WENV182543402
OJBB01000035
[OJBB] seawater metagenome; Sea water
25896
25810
-
Leu
TAA
[ENA]
¡û
>WENV182544216
OJBE01009080
[OJBE] seawater metagenome; Sea water
149
235
+
Leu
TAA
[ENA]
¡û
>WENV182547166
OJBR01003907
[OJBR] seawater metagenome; Sea water
115
201
+
Leu
TAA
[ENA]
¡û
>WENV182550145
OJBZ01005390
[OJBZ] seawater metagenome; Sea water
115
201
+
Leu
TAA
[ENA]
¡û
>WENV182552532
OJCK01006341
[OJCK] seawater metagenome; Sea water
39
125
+
Leu
TAA
[ENA]
¡û
>WENV182553629
OJCR01015505
[OJCR] seawater metagenome; Sea water
1601
1515
-
Leu
TAA
[ENA]
¡û
>WENV182554932
OJCY01000022
[OJCY] seawater metagenome; Sea water
13442
13528
+
Leu
TAA
[ENA]
¡û
>WENV182555796
OJDD01000904
[OJDD] seawater metagenome; Sea water
4768
4682
-
Leu
TAA
[ENA]
¡û
>WENV182562241
OJDZ01000176
[OJDZ] seawater metagenome; Sea water
5852
5938
+
Leu
TAA
[ENA]
¡û
>WENV182565753
OJEH01040242
[OJEH] seawater metagenome; Sea water
25
111
+
Leu
TAA
[ENA]
¡û
>WENV182566721
OJEM01000940
[OJEM] seawater metagenome; Sea water
5607
5521
-
Leu
TAA
[ENA]
¡û
>WENV182567660
OJEP01000018
[OJEP] seawater metagenome; Sea water
111189
111103
-
Leu
TAA
[ENA]
¡û
>WENV182568208
OJER01002471
[OJER] seawater metagenome; Sea water
927
1011
+
Leu
TAA
[ENA]
¡û
>WENV182572062
OJFL01000195
[OJFL] seawater metagenome; Sea water
33019
33105
+
Leu
TAA
[ENA]
¡û
>WENV182573142
OJFP01000161
[OJFP] seawater metagenome; Sea water
5319
5405
+
Leu
TAA
[ENA]
¡û
>WENV182577075
OJGC01002473
[OJGC] seawater metagenome; Sea water
729
643
-
Leu
TAA
[ENA]
¡û
>WENV182577701
OJGH01001579
[OJGH] seawater metagenome; Sea water
1123
1037
-
Leu
TAA
[ENA]
¡û
>WENV182578501
OJGO01000216
[OJGO] seawater metagenome; Sea water
25896
25810
-
Leu
TAA
[ENA]
¡û
>WENV182581229
OJGX01001162
[OJGX] seawater metagenome; Sea water
11099
11013
-
Leu
TAA
[ENA]
¡û
>WENV182582847
OJHC01000858
[OJHC] seawater metagenome; Sea water
4682
4768
+
Leu
TAA
[ENA]
¡û
>WENV182584392
OJHG01000114
[OJHG] seawater metagenome; Sea water
115
201
+
Leu
TAA
[ENA]
¡û
>WENV182585814
OJHI01014524
[OJHI] seawater metagenome; Sea water
543
457
-
Leu
TAA
[ENA]
¡û
>WENV182586808
OJHK01005760
[OJHK] seawater metagenome; Sea water
118
204
+
Leu
TAA
[ENA]
¡û
>WENV182591044
OJIK01016000
[OJIK] seawater metagenome; Sea water
761
675
-
Leu
TAA
[ENA]
¡û
>WENV182592379
OJIR01000190
[OJIR] seawater metagenome; Sea water
5319
5405
+
Leu
TAA
[ENA]
¡û
>WENV183055426
OLHB01005513
[OLHB] seawater metagenome; Sea water
196
282
+
Leu
TAA
[ENA]
¡û
>WENV183057350
OLHL01000524
[OLHL] seawater metagenome; Sea water
17518
17432
-
Leu
TAA
[ENA]
¡û
>WENV183059829
OLHV01010112
[OLHV] seawater metagenome; Sea water
756
670
-
Leu
TAA
[ENA]
¡û
>WENV170024408
BCQL01055755
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
2
88
+
Leu
TAA
[ENA]
¡û
>WENV170025258
BCQL01269885
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
6
92
+
Leu
TAA
[ENA]
¡û
>C191217655
LR136958
Gammaproteobacteria
Alteromonas sp. 76-1 [LR136958]
2243043
2243129
+
Leu
TAA
-
¡û
>W1910178288
BJEQ01000018
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
89194
89280
+
Leu
TAA
[ENA]
¡û
>W1910178289
BJEQ01000018
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
89596
89682
+
Leu
TAA
[ENA]
¡û
>W1910178292
BJEQ01000018
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
89994
90080
+
Leu
TAA
[ENA]
¡û
>W1911641231
PYHU01000025
Gammaproteobacteria
Alteromonas sp. KS69 [PYHU]
56901
56987
+
Leu
TAA
[ENA]
¡û
>W1810016174
BGNG01000001
Gammaproteobacteria
Glaciecola sp. KUL10 [BGNG]
249253
249167
-
Leu
TAA
[ENA]
¡û
>W1810249375
PQCB01000016
Gammaproteobacteria
Pseudoalteromonas sp. T1lg24 [PQCB]
146843
146929
+
Leu
TAA
[ENA]
¡û
>W2010091627
BJEQ01000018
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
89194
89280
+
Leu
TAA
[ENA]
¡û
>W2010091628
BJEQ01000018
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
89596
89682
+
Leu
TAA
[ENA]
¡û
>W2010091631
BJEQ01000018
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
89994
90080
+
Leu
TAA
[ENA]
¡û
>W2010310231
CABWLX010000007
Gammaproteobacteria
Alteromonas sp. 38 [CABWLX]
1331340
1331254
-
Leu
TAA
[ENA]
¡û
>W2011199087
PNBW01000030
Gammaproteobacteria
Pseudoalteromonas aurantia S3895 [PNBW]
1771
1685
-
Leu
TAA
[ENA]
¡û
>W2011199089
PNBW01000030
Gammaproteobacteria
Pseudoalteromonas aurantia S3895 [PNBW]
1531
1445
-
Leu
TAA
[ENA]
¡û
>W2011199093
PNBW01000030
Gammaproteobacteria
Pseudoalteromonas aurantia S3895 [PNBW]
1094
1008
-
Leu
TAA
[ENA]
¡û
>W2011199362
PNBZ01000053
Gammaproteobacteria
Pseudoalteromonas spongiae S3655 [PNBZ]
302
388
+
Leu
TAA
[ENA]
¡û
>W2011199377
PNBZ01000084
Gammaproteobacteria
Pseudoalteromonas spongiae S3655 [PNBZ]
217
303
+
Leu
TAA
[ENA]
¡û
>W2011200228
PNCL01000187
Gammaproteobacteria
Pseudoalteromonas citrea S2231 [PNCL]
1333
1247
-
Leu
TAA
[ENA]
¡û
>W2011231562
PYHU01000025
Gammaproteobacteria
Alteromonas sp. KS69 [PYHU]
56901
56987
+
Leu
TAA
[ENA]
¡û
>W2011352593
RAHT01000007
Gammaproteobacteria
Ningiella ruwaisensis B66 [RAHT]
35714
35628
-
Leu
TAA
[ENA]
¡û
>W2011524284
SAIS01000001
Gammaproteobacteria
Paraglaciecola sp. D3211 [SAIS]
578199
578285
+
Leu
TAA
[ENA]
¡û
>W2011858120
UNRE01000001
Gammaproteobacteria
Agarivorans sp. Alg241-V36 [UNRE]
175562
175648
+
Leu
TAA
[ENA]
¡û
>W2011858121
UNRE01000001
Gammaproteobacteria
Agarivorans sp. Alg241-V36 [UNRE]
175953
176039
+
Leu
TAA
[ENA]
¡û
>W2011858124
UNRE01000001
Gammaproteobacteria
Agarivorans sp. Alg241-V36 [UNRE]
176362
176448
+
Leu
TAA
[ENA]
¡û
>W2012330183
WHRY01000003
Gammaproteobacteria
Agarivorans sp. B2Z047 [WHRY]
324811
324897
+
Leu
TAA
[ENA]
¡û
>W2012330184
WHRY01000003
Gammaproteobacteria
Agarivorans sp. B2Z047 [WHRY]
325203
325289
+
Leu
TAA
[ENA]
¡û
>W2012330187
WHRY01000003
Gammaproteobacteria
Agarivorans sp. B2Z047 [WHRY]
325658
325744
+
Leu
TAA
[ENA]
¡û
>W2110016281
BLPI01000001
Gammaproteobacteria
Agarivorans litoreus NBRC 110444 [BLPI]
191197
191111
-
Leu
TAA
[ENA]
¡û
>W2110016282
BLPI01000001
Gammaproteobacteria
Agarivorans litoreus NBRC 110444 [BLPI]
190806
190720
-
Leu
TAA
[ENA]
¡û
>W2110016285
BLPI01000001
Gammaproteobacteria
Agarivorans litoreus NBRC 110444 [BLPI]
190352
190266
-
Leu
TAA
[ENA]
¡û
>W2110020761
BMDY01000001
Gammaproteobacteria
Agarivorans gilvus CGMCC 1.10131 [BMDY]
243015
242929
-
Leu
TAA
[ENA]
¡û
>W2110020762
BMDY01000001
Gammaproteobacteria
Agarivorans gilvus CGMCC 1.10131 [BMDY]
242678
242592
-
Leu
TAA
[ENA]
¡û
>W2110020765
BMDY01000001
Gammaproteobacteria
Agarivorans gilvus CGMCC 1.10131 [BMDY]
239687
239601
-
Leu
TAA
[ENA]
¡û
>W2110030668
BMLS01000003
Gammaproteobacteria
Bowmanella pacifica CGMCC 1.7086 [BMLS]
326971
326885
-
Leu
TAA
[ENA]
¡û
>W2110098366
CAJFDV010000013
Gammaproteobacteria
Alteromonas sp. 154 [CAJFDV]
423674
423588
-
Leu
TAA
[ENA]
¡û
>W2110359031
JADNRN010000001
Gammaproteobacteria
Glaciecola sp. MH2013 [JADNRN]
1287262
1287176
-
Leu
TAA
[ENA]
¡û
>W2110447088
JAESDI010000016
Gammaproteobacteria
Alteromonas lipotrueae MD_652 [JAESDI]
40500
40414
-
Leu
TAA
[ENA]
¡û
>W2110447115
JAESDJ010000004
Gammaproteobacteria
Alteromonas lipotrueae MD_674 [JAESDJ]
96343
96429
+
Leu
TAA
[ENA]
¡û
>W2110537456
JAGGDM010000007
Gammaproteobacteria
Alteromonas sp. K632G [JAGGDM]
45727
45813
+
Leu
TAA
[ENA]
¡û
>W2110556789
JAGJDY010000013
Gammaproteobacteria
Alteromonas sp. MMG017 [JAGJDY]
9011
9097
+
Leu
TAA
[ENA]
¡û
>W2110667322
JAHZSS010000005
Gammaproteobacteria
Neiella sp. 126 [JAHZSS]
139268
139182
-
Leu
TAA
[ENA]
¡û
>W2110691078
JAIOUC010000005
Gammaproteobacteria
Alteromonas stellipolaris T18 [JAIOUC]
319014
318928
-
Leu
TAA
[ENA]
¡û
>C211007601
AP023032
Gammaproteobacteria
Agarivorans albus JCM 21469 [AP023032]
2123332
2123418
+
Leu
TAA
-
¡û
>C211007602
AP023032
Gammaproteobacteria
Agarivorans albus JCM 21469 [AP023032]
2123724
2123810
+
Leu
TAA
-
¡û
>C211007605
AP023032
Gammaproteobacteria
Agarivorans albus JCM 21469 [AP023032]
2124342
2124428
+
Leu
TAA
-
¡û
>C211007696
AP023033
Gammaproteobacteria
Agarivorans aestuarii KCTC 32543 [AP023033]
2100829
2100915
+
Leu
TAA
-
¡û
>C211007697
AP023033
Gammaproteobacteria
Agarivorans aestuarii KCTC 32543 [AP023033]
2101214
2101300
+
Leu
TAA
-
¡û
>C211348384
CP076681
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis A316 [CP076681]
808761
808847
+
Leu
TAA
-
¡û
>C211348386
CP076681
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis A316 [CP076681]
809026
809112
+
Leu
TAA
-
¡û
>C211348389
CP076681
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis A316 [CP076681]
809441
809527
+
Leu
TAA
-
¡û
>C231249160
CP088080
Gammaproteobacteria
Agarivorans sp. B2Z047 [CP088080]
2621109
2621195
+
Leu
TAA
-
¡û
>C231249161
CP088080
Gammaproteobacteria
Agarivorans sp. B2Z047 [CP088080]
2621501
2621587
+
Leu
TAA
-
¡û
>C231249164
CP088080
Gammaproteobacteria
Agarivorans sp. B2Z047 [CP088080]
2621956
2622042
+
Leu
TAA
-
¡û
>C231298531
CP091442
Gammaproteobacteria
Pseudoalteromonas sp. CF6-2 [CP091442]
1493801
1493887
+
Leu
TAA
-
¡û
>C231298533
CP091442
Gammaproteobacteria
Pseudoalteromonas sp. CF6-2 [CP091442]
1494072
1494158
+
Leu
TAA
-
¡û
>C231298536
CP091442
Gammaproteobacteria
Pseudoalteromonas sp. CF6-2 [CP091442]
1494484
1494570
+
Leu
TAA
-
¡û
>C231370412
CP096670
Gammaproteobacteria
Agarivorans sp. TSD2052 [CP096670]
1892021
1892107
+
Leu
TAA
-
¡û
>C231370415
CP096670
Gammaproteobacteria
Agarivorans sp. TSD2052 [CP096670]
1892597
1892683
+
Leu
TAA
-
¡û
>C241173502
CP058414
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis D1497 [CP058414]
1944738
1944824
+
Leu
TAA
-
¡û
>C241173504
CP058414
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis D1497 [CP058414]
1945001
1945087
+
Leu
TAA
-
¡û
>C241173507
CP058414
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis D1497 [CP058414]
1945416
1945502
+
Leu
TAA
-
¡û
>C241175261
CP058972
Gammaproteobacteria
Pseudoalteromonas sp. JSTW [CP058972]
1425828
1425914
+
Leu
TAA
-
¡û
>C241175263
CP058972
Gammaproteobacteria
Pseudoalteromonas sp. JSTW [CP058972]
1426093
1426179
+
Leu
TAA
-
¡û
>C241175266
CP058972
Gammaproteobacteria
Pseudoalteromonas sp. JSTW [CP058972]
1426428
1426514
+
Leu
TAA
-
¡û
>C241280848
CP128185
Gammaproteobacteria
Aliiglaciecola sp. LCG003 [CP128185]
2183681
2183767
+
Leu
TAA
-
¡û
>C241329406
CP136708
Gammaproteobacteria
Alteromonas sp. CI.11.F.A3 [CP136708]
2566843
2566757
-
Leu
TAA
-
¡û
>W2310025630
BSOT01000005
Gammaproteobacteria
Agaribacter marinus NBRC 110023 [BSOT]
679730
679816
+
Leu
TAA
[ENA]
¡û
>C11100881
CP002339
Gammaproteobacteria
Alteromonas naphthalenivorans SN2 [CP002339]
1875486
1875400
-
Leu
TAA
[Ensembl]
¡û
>C161049688
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
670541
670455
-
Leu
TAA
-
¡û
>C161049689
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
670204
670118
-
Leu
TAA
-
¡û
>C161049692
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
667213
667127
-
Leu
TAA
-
¡û
>C161051441
CP013120
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CP013120]
1837737
1837651
-
Leu
TAA
[Ensembl]
¡û
>C161062095
CP013926
Gammaproteobacteria
Alteromonas stellipolaris LMG 21861 [CP013926]
1313939
1313853
-
Leu
TAA
-
¡û
>C161062272
CP013932
Gammaproteobacteria
Alteromonas sp. Mac1 [CP013932]
1352501
1352415
-
Leu
TAA
-
¡û
>C161062302
CP013933
Gammaproteobacteria
Alteromonas sp. Mac2 [CP013933]
1334396
1334310
-
Leu
TAA
-
¡û
>C161071090
CP014322
Gammaproteobacteria
Alteromonas stellipolaris R10SW13 [CP014322]
1290505
1290419
-
Leu
TAA
-
¡û
>C161086284
CP015345
Gammaproteobacteria
Alteromonas stellipolaris PQQ-42 [CP015345]
3602242
3602156
-
Leu
TAA
-
¡û
>C161086321
CP015346
Gammaproteobacteria
Alteromonas stellipolaris PQQ-44 [CP015346]
4581038
4581124
+
Leu
TAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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