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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.65102 (101 seq.)
>W1711460328
MJED01000007
Bacillota
Enterococcus gallinarum [MJED]
173685
173600
-
Leu
CAA
[ENA]
¡û
>W1712069806
NGMQ01000001
Bacillota
Enterococcus gallinarum [NGMQ]
2182977
2182892
-
Leu
CAA
[ENA]
¡û
>WENV180453386
OBXM01000067
[OBXM] human gut metagenome; faeces
540
625
+
Leu
CAA
[ENA]
¡û
>WENV180497043
OCAE01000117
[OCAE] human gut metagenome; faeces
77633
77548
-
Leu
CAA
[ENA]
¡û
>WENV181097263
OECA01004635
[OECA] human metagenome; G_DNA_Tongue dorsum
503
588
+
Leu
CAA
[ENA]
¡û
>WENV182938185
OKVD01000755
[OKVD] human gut metagenome; human gut
6364
6449
+
Leu
CAA
[ENA]
¡û
>WENV182952059
OKVV01001697
[OKVV] human gut metagenome; human gut
97
182
+
Leu
CAA
[ENA]
¡û
>WENV170539882
CWGP01000089
[CWGP] human gut metagenome; ENVO:feces
1005
1090
+
Leu
CAA
[ENA]
¡û
>WENV170541159
CXPK01000372
[CXPK] human gut metagenome genome assembly hA2, contig hA2_contig001157.; ENVO:feces
1281
1366
+
Leu
CAA
[ENA]
¡û
>WENV170541601
CXPQ01001867
[CXPQ] human gut metagenome genome assembly hB10, contig; ENVO:feces
1290
1375
+
Leu
CAA
[ENA]
¡û
>WENV170542231
CXPZ01000693
[CXPZ] human gut metagenome genome assembly hB5, contig hB5_contig003914.; ENVO:feces
283
198
-
Leu
CAA
[ENA]
¡û
>WENV170542710
CXQH01000550
[CXQH] human gut metagenome genome assembly hC3, contig hC3_contig001864.; ENVO:feces
3440
3355
-
Leu
CAA
[ENA]
¡û
>WENV170544472
CXRK01000410
[CXRK] human gut metagenome genome assembly hE7, contig hE7_contig003222.; ENVO:feces
3747
3662
-
Leu
CAA
[ENA]
¡û
>WENV170545216
CXRX01000095
[CXRX] human gut metagenome genome assembly hG12, contig; ENVO:feces
3604
3519
-
Leu
CAA
[ENA]
¡û
>C191110799
CP033740
Bacillota
Enterococcus sp. FDAARGOS_553 [CP033740]
2029702
2029787
+
Leu
CAA
-
¡û
>C191177810
CP040461
Bacillota
Enterococcus sp. M190262 [CP040461]
2045094
2045179
+
Leu
CAA
-
¡û
>W09115413
ACAJ01000015
Bacillota
Enterococcus gallinarum EG2 [ACAJ]
975
1060
+
Leu
CAA
[ENA]
¡û
>W141734586
JNLR01000003
Bacillota
Enterococcus gallinarum [JNLR]
2057999
2057914
-
Leu
CAA
[ENA]
¡û
>W1910175439
BJCC01000019
Bacillota
Enterococcus florum Gos25-1 [BJCC]
1330
1415
+
Leu
CAA
[ENA]
¡û
>W1910609906
LERZ01000012
Bacillota
Enterococcus gallinarum 298EA1 [LERZ]
202734
202649
-
Leu
CAA
[ENA]
¡û
>W1911238654
NSCY01000002
Bacillota
Enterococcus gallinarum 9402 [NSCY]
1358
1443
+
Leu
CAA
[ENA]
¡û
>W1911710295
QPQX01000006
Bacillota
Enterococcus sp. ARL09-542 [QPQX]
1136
1221
+
Leu
CAA
[ENA]
¡û
>W1810237755
PPHK01000002
Bacillota
Enterococcus gallinarum EG1 [PPHK]
2386
2471
+
Leu
CAA
[ENA]
¡û
>W1810477019
QAOM01000001
Bacillota
Trichococcus patagoniensis DSM 18806 [QAOM]
1183
1269
+
Leu
CAA
[ENA]
¡û
>W1810477032
QAOM01000017
Bacillota
Trichococcus patagoniensis DSM 18806 [QAOM]
44
130
+
Leu
CAA
[ENA]
¡û
>W1810477041
QAOM01000021
Bacillota
Trichococcus patagoniensis DSM 18806 [QAOM]
54285
54199
-
Leu
CAA
[ENA]
¡û
>W1810477053
QAOM01000037
Bacillota
Trichococcus patagoniensis DSM 18806 [QAOM]
5
91
+
Leu
CAA
[ENA]
¡û
>W1810504596
QBLC01000004
Bacillota
Trichococcus paludicola B7-2 [QBLC]
298213
298127
-
Leu
CAA
[ENA]
¡û
>W1810907691
QVHY01000003
Bacillota
Enterococcus gallinarum OF05-6AC [QVHY]
363072
362987
-
Leu
CAA
[ENA]
¡û
>W2010149284
CAACXX010000002
Bacillota
Enterococcus saccharolyticus 3012STDY6252241 [CAACXX]
63426
63341
-
Leu
CAA
[ENA]
¡û
>W2010160254
CAAKOE010000088
Bacillota
Enterococcus gallinarum [CAAKOE]
1005
1090
+
Leu
CAA
[ENA]
¡û
>W2010165324
CABEIK010000001
Bacillota
Enterococcus gallinarum NCTC8736 [CABEIK]
1005052
1005137
+
Leu
CAA
[ENA]
¡û
>W2010195951
CABGIR010000002
Bacillota
Enterococcus gallinarum 4928STDY7071411 [CABGIR]
407249
407164
-
Leu
CAA
[ENA]
¡û
>W2010199673
CABGNS010000002
Bacillota
Enterococcus gallinarum 4928STDY7071418 [CABGNS]
407258
407173
-
Leu
CAA
[ENA]
¡û
>W2010203187
CABGTZ010000002
Bacillota
Enterococcus gallinarum 4928STDY7071615 [CABGTZ]
524870
524785
-
Leu
CAA
[ENA]
¡û
>W2010252636
CABIZP020000004
Bacillota
Enterococcus gallinarum [CABIZP]
474984
474899
-
Leu
CAA
[ENA]
¡û
>W2010287066
CABMMG010000028
Bacillota
Enterococcus caccae [CABMMG]
147
232
+
Leu
CAA
[ENA]
¡û
>W2010446071
JAABOR010000002
Bacillota
Enterococcus gallinarum EGR748 [JAABOR]
1136
1221
+
Leu
CAA
[ENA]
¡û
>W2010562641
JAASUH010000014
Bacillota
Listeria seeligeri FSL L7-1455 [JAASUH]
67781
67698
-
Leu
CAA
[ENA]
¡û
>W2010608174
JABMDB010000014
Bacillota
Enterococcus gallinarum 57847415 [JABMDB]
97520
97435
-
Leu
CAA
[ENA]
¡û
>W2010644653
JABXHJ010000010
Bacillota
Enterococcus gallinarum EG6 [JABXHJ]
155342
155257
-
Leu
CAA
[ENA]
¡û
>W2010644701
JABXHK010000015
Bacillota
Enterococcus gallinarum EG5 [JABXHK]
154717
154632
-
Leu
CAA
[ENA]
¡û
>W2010644857
JABXJK010000060
Bacillota
Enterococcus gallinarum EG4 [JABXJK]
995
1080
+
Leu
CAA
[ENA]
¡û
>W2010644900
JABXJL010000048
Bacillota
Enterococcus gallinarum EG3 [JABXJL]
995
1080
+
Leu
CAA
[ENA]
¡û
>W2010644944
JABXJM010000045
Bacillota
Enterococcus gallinarum EG2 [JABXJM]
995
1080
+
Leu
CAA
[ENA]
¡û
>W2010644987
JABXJN010000068
Bacillota
Enterococcus gallinarum EG1 [JABXJN]
995
1080
+
Leu
CAA
[ENA]
¡û
>W2010667037
JACBYD010000038
Bacillota
Enterococcus gallinarum ENT [JACBYD]
132953
132868
-
Leu
CAA
[ENA]
¡û
>W2010770908
LERZ01000012
Bacillota
Enterococcus gallinarum 298EA1 [LERZ]
202734
202649
-
Leu
CAA
[ENA]
¡û
>W2011065627
NSCY01000002
Bacillota
Enterococcus gallinarum 9402 [NSCY]
1358
1443
+
Leu
CAA
[ENA]
¡û
>W2011284773
QPQX01000006
Bacillota
Enterococcus sp. ARL09-542 [QPQX]
1136
1221
+
Leu
CAA
[ENA]
¡û
>W2011342139
QYLR01000005
Bacillota
Enterococcus gallinarum N010.J-17 [QYLR]
1136
1221
+
Leu
CAA
[ENA]
¡û
>W2011342243
QYMQ01000002
Bacillota
Enterococcus gallinarum N018.G-3 [QYMQ]
1136
1221
+
Leu
CAA
[ENA]
¡û
>W2011343208
QYOK01000008
Bacillota
Enterococcus gallinarum T0181B.E-25 [QYOK]
1136
1221
+
Leu
CAA
[ENA]
¡û
>W2011452441
RKPB01000014
Bacillota
Enterococcus gallinarum P15 C A14 [RKPB]
1186
1271
+
Leu
CAA
[ENA]
¡û
>W2011452466
RKPF01000003
Bacillota
Enterococcus gallinarum P8 C A14 [RKPF]
283523
283438
-
Leu
CAA
[ENA]
¡û
>W2011452606
RKPO01000013
Bacillota
Enterococcus gallinarum P17 C A7 [RKPO]
61794
61709
-
Leu
CAA
[ENA]
¡û
>W2011452662
RKPQ01000013
Bacillota
Enterococcus gallinarum P16 C A7 [RKPQ]
61794
61709
-
Leu
CAA
[ENA]
¡û
>W2011452775
RKPX01000014
Bacillota
Enterococcus gallinarum P9 C A7 [RKPX]
1186
1271
+
Leu
CAA
[ENA]
¡û
>W2011671903
SPOW01000001
Bacillota
Enterococcus gallinarum C2 [SPOW]
1308
1393
+
Leu
CAA
[ENA]
¡û
>W2011822763
UFYU01000002
Bacillota
Enterococcus gallinarum NCTC12359 [UFYU]
1015406
1015491
+
Leu
CAA
[ENA]
¡û
>W2011822928
UFYW01000001
Bacillota
Enterococcus gallinarum NCTC12360 [UFYW]
1416642
1416557
-
Leu
CAA
[ENA]
¡û
>W2012124415
VRLO01000001
Bacillota
Enterococcus gallinarum S52016 [VRLO]
1488
1573
+
Leu
CAA
[ENA]
¡û
>W2012196428
VWOC01000005
Bacillota
Enterococcus gallinarum 25-4C [VWOC]
996
1081
+
Leu
CAA
[ENA]
¡û
>W2012377748
WMHB01000001
Bacillota
Enterococcus gallinarum W17 [WMHB]
1307
1392
+
Leu
CAA
[ENA]
¡û
>W2012377810
WMHC01000003
Bacillota
Enterococcus gallinarum G12S [WMHC]
1102
1187
+
Leu
CAA
[ENA]
¡û
>W2012468522
WVTI01000001
Bacillota
Enterococcus gallinarum E3404 [WVTI]
471074
470989
-
Leu
CAA
[ENA]
¡û
>W2110121571
CAJSYR010000002
Bacillota
Enterococcus gallinarum [CAJSYR]
524072
523987
-
Leu
CAA
[ENA]
¡û
>W2110121915
CAJSZC010000003
Bacillota
Enterococcus gallinarum [CAJSZC]
1180
1265
+
Leu
CAA
[ENA]
¡û
>W2110158825
JAASJM010000031
Bacillota
Enterococcus gallinarum K55_2 [JAASJM]
415
330
-
Leu
CAA
[ENA]
¡û
>W2110223044
JACJKG010000015
Bacillota
Enterococcus gallinarum An774 [JACJKG]
83036
82951
-
Leu
CAA
[ENA]
¡û
>W2110316631
JADGKL010000038
Bacillota
Enterococcus gallinarum ENT.1 [JADGKL]
132953
132868
-
Leu
CAA
[ENA]
¡û
>W2110317599
JADGLH010000001
Bacillota
Enterococcus gallinarum 19428wB3_C2 [JADGLH]
1308
1393
+
Leu
CAA
[ENA]
¡û
>W2110354499
JADNKS010000001
Bacillota
Enterococcus gallinarum BSD2780061688_150302_F2 [JADNKS]
1136
1221
+
Leu
CAA
[ENA]
¡û
>W2110354954
JADNLH010000003
Bacillota
Enterococcus gallinarum BSD2780061688_150302_H8 [JADNLH]
1136
1221
+
Leu
CAA
[ENA]
¡û
>W2110355803
JADNMQ010000007
Bacillota
Enterococcus gallinarum 1001095H_141210_E7 [JADNMQ]
1114
1199
+
Leu
CAA
[ENA]
¡û
>W2110366817
JADPDT010000007
Bacillota
Enterococcus gallinarum BSD2780061687_150420_G3 [JADPDT]
189177
189092
-
Leu
CAA
[ENA]
¡û
>W2110369732
JADPHE010000002
Bacillota
Enterococcus gallinarum D52t1_170925_E8 [JADPHE]
1136
1221
+
Leu
CAA
[ENA]
¡û
>W2110404362
JAEANO010000001
Bacillota
Enterococcus gallinarum QAU17 [JAEANO]
562061
562146
+
Leu
CAA
[ENA]
¡û
>W2110511073
JAFLJF010000001
Bacillota
Enterococcus gallinarum 74-1 [JAFLJF]
1920
2005
+
Leu
CAA
[ENA]
¡û
>W2110620623
JAHLOT010000004
Bacillota
Enterococcus gallinarum N13 [JAHLOT]
308952
308867
-
Leu
CAA
[ENA]
¡û
>C211083612
CP050485
Bacillota
Enterococcus gallinarum EGM181 [CP050485]
1248363
1248448
+
Leu
CAA
-
¡û
>W2110728842
JAJCLL010000018
Bacillota
Enterococcus gallinarum DFI.7.69 [JAJCLL]
1102
1187
+
Leu
CAA
[ENA]
¡û
>C231061430
CP050816
Bacillota
Enterococcus gallinarum EG81 [CP050816]
1538243
1538328
+
Leu
CAA
-
¡û
>C231161449
CP078505
Bacillota
Enterococcus gallinarum fecal_iso1 [CP078505]
1064440
1064525
+
Leu
CAA
-
¡û
>C231288037
CP090983
Bacillota
Jeotgalibaca sp. MA1X17-3 [CP090983]
1885204
1885121
-
Leu
CAA
-
¡û
>C231288069
CP090983
Bacillota
Jeotgalibaca sp. MA1X17-3 [CP090983]
196735
196650
-
Leu
CAA
-
¡û
>C231292453
CP091204
Bacillota
Enterococcus gallinarum 674 [CP091204]
1003130
1003215
+
Leu
CAA
-
¡û
>W2110768377
SIYA01000018
Bacillota
Enterococcus gallinarum 2CIL2 [SIYA]
995
1080
+
Leu
CAA
[ENA]
¡û
>W2110768448
SIYE01000021
Bacillota
Enterococcus gallinarum 2SIJ202 [SIYE]
53295
53210
-
Leu
CAA
[ENA]
¡û
>W2110768499
SIYL01000011
Bacillota
Enterococcus gallinarum 2UPA1 [SIYL]
996
1081
+
Leu
CAA
[ENA]
¡û
>W2110768650
SIYT01000008
Bacillota
Enterococcus gallinarum 3CPD4 [SIYT]
994
1079
+
Leu
CAA
[ENA]
¡û
>W2110768702
SIYV01000011
Bacillota
Enterococcus gallinarum 3CPL1 [SIYV]
995
1080
+
Leu
CAA
[ENA]
¡û
>W2110768756
SIYW01000017
Bacillota
Enterococcus gallinarum 3CPL4 [SIYW]
1240
1325
+
Leu
CAA
[ENA]
¡û
>W2110769161
SJOK01000016
Bacillota
Enterococcus gallinarum 2SIJ201 [SJOK]
975
1060
+
Leu
CAA
[ENA]
¡û
>W2110777151
VRYP01000011
Bacillota
Enterococcus gallinarum 6-8 [VRYP]
1073
1158
+
Leu
CAA
[ENA]
¡û
>C241107402
CP046307
Bacillota
Enterococcus gallinarum FDAARGOS_728 [CP046307]
155529
155614
+
Leu
CAA
-
¡û
>W2110801047
WSZL01000004
Bacillota
Enterococcus gallinarum EG81 [WSZL]
386688
386603
-
Leu
CAA
[ENA]
¡û
>W1511187721
JMGP01000002
Bacillota
Enterococcus gallinarum A6981 [JMGP]
1136
1221
+
Leu
CAA
[ENA]
¡û
>W121001866
ADLY01000038
Bacillota
Enterococcus saccharolyticus 30_1 [ADLY]
1482
1567
+
Leu
CAA
[ENA]
¡û
>W1610066952
BCQE01000017
Bacillota
Enterococcus gallinarum NBRC 100675 [BCQE]
88182
88097
-
Leu
CAA
[ENA]
¡û
>W1710064383
BCQE01000017
Bacillota
Enterococcus gallinarum NBRC 100675 [BCQE]
88182
88097
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK