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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.65208 (101 seq.)
>W1711139022
LVEP01000024
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
594
510
-
Ser
GCT
[ENA]
¡û
>W1711146807
LVJE01000010
Bacteroidota
Flavobacterium fryxellicola [LVJE]
476312
476396
+
Ser
GCT
[ENA]
¡û
>W131225415
AUDO01000007
Bacteroidota
Flavobacterium frigidarium DSM 17623 [AUDO]
114369
114285
-
Ser
GCT
[ENA]
¡û
>W1711712517
MTCA01000034
Bacteroidota
Flavobacterium sp. FPG59 [MTCA]
12453
12367
-
Ser
GCT
[ENA]
¡û
>W1711966548
NCWQ01000043
Bacteroidota
Flavobacterium sp. AJR [NCWQ]
1998
1912
-
Ser
GCT
[ENA]
¡û
>C171066031
CP017688
Bacteroidota
Flavobacterium crassostreae LPB0076 [CP017688]
2322978
2322894
-
Ser
GCT
-
¡û
>W141023456
AJXL01000023
Bacteroidota
Flavobacterium sp. ACAM 123 [AJXL]
2257
2341
+
Ser
GCT
[ENA]
¡û
>WENV180391030
OBPM01001901
[OBPM] marine metagenome; ENVO:00002010
1718
1802
+
Ser
GCT
[ENA]
¡û
>WENV180594136
OCOY01056830
[OCOY] marine metagenome; ENVO:00002010
261
345
+
Ser
GCT
[ENA]
¡û
>WENV183617850
OOEG01154578
[OOEG] marine metagenome; sea ice
146
62
-
Ser
GCT
[ENA]
¡û
>WENV170559349
CXWL01120152
[CXWL] groundwater metagenome; biofilm material
1006
922
-
Ser
GCT
[ENA]
¡û
>C181047430
CP020918
Bacteroidota
Flavobacterium faecale WV33 [CP020918]
3852251
3852167
-
Ser
GCT
-
¡û
>W141820224
JQMS01000001
Bacteroidota
Flavobacterium sp. 83 [JQMS]
3231862
3231778
-
Ser
GCT
[ENA]
¡û
>W1810072188
PEFE01000001
Bacteroidota
Flavobacterium sp. 11 [PEFE]
3120704
3120620
-
Ser
GCT
[ENA]
¡û
>W1810121199
PHUE01000001
Bacteroidota
Flavobacterium sp. 5 [PHUE]
48714
48630
-
Ser
GCT
[ENA]
¡û
>W1810156514
PJBJ01000022
Bacteroidota
Flavobacterium sp. ALD4 [PJBJ]
430201
430285
+
Ser
GCT
[ENA]
¡û
>W1810365419
PVUB01000001
Bacteroidota
Flavobacterium granuli DSM 17797 [PVUB]
38970
38886
-
Ser
GCT
[ENA]
¡û
>W1810533239
QCZH01000010
Bacteroidota
Flavobacterium laiguense LB2P30 [QCZH]
27254
27338
+
Ser
GCT
[ENA]
¡û
>W1810722602
QNUX01000008
Bacteroidota
Flavobacterium psychrolimnae LMG 22018 [QNUX]
112101
112185
+
Ser
GCT
[ENA]
¡û
>W1810723024
QNVY01000002
Bacteroidota
Flavobacterium petrolei Kopri-42 [QNVY]
169477
169561
+
Ser
GCT
[ENA]
¡û
>W1810763379
QQBA01000018
Bacteroidota
Flavobacterium glaciei DSM 19728 [QQBA]
47163
47079
-
Ser
GCT
[ENA]
¡û
>W2010528573
JAAOBY010000003
Bacteroidota
Flavobacterium sp. F339 [JAAOBY]
236211
236295
+
Ser
GCT
[ENA]
¡û
>W2010613134
JABSNK010000021
Bacteroidota
Flavobacterium sp. 28A [JABSNK]
882
798
-
Ser
GCT
[ENA]
¡û
>W2010613174
JABSNL010000009
Bacteroidota
Flavobacterium sp. 14A [JABSNL]
114057
113973
-
Ser
GCT
[ENA]
¡û
>W2010613261
JABSNN010000005
Bacteroidota
Flavobacterium sp. 7E [JABSNN]
6970
6886
-
Ser
GCT
[ENA]
¡û
>W2011262698
QKNZ01000138
Bacteroidota
Flavobacterium sp. SOK18b [QKNZ]
7650
7566
-
Ser
GCT
[ENA]
¡û
>W2011375180
RBKZ01000001
Bacteroidota
Flavobacterium sp. 120 [RBKZ]
1351981
1352065
+
Ser
GCT
[ENA]
¡û
>W2011388677
RBXA01000002
Bacteroidota
Flavobacterium limicola DSM 15094 [RBXA]
130528
130612
+
Ser
GCT
[ENA]
¡û
>W2011388869
RBXD01000001
Bacteroidota
Flavobacterium sp. 123 [RBXD]
59993
59909
-
Ser
GCT
[ENA]
¡û
>W2011412718
REFH01000009
Bacteroidota
Flavobacterium weaverense DSM 19727 [REFH]
458771
458687
-
Ser
GCT
[ENA]
¡û
>W2011504699
RYDF01000007
Bacteroidota
Flavobacterium sp. GSN2 [RYDF]
116794
116710
-
Ser
GCT
[ENA]
¡û
>W2011504775
RYDG01000006
Bacteroidota
Flavobacterium sp. LB2P53 [RYDG]
137383
137299
-
Ser
GCT
[ENA]
¡û
>W2011504815
RYDH01000006
Bacteroidota
Flavobacterium sp. LS1R10 [RYDH]
115077
114993
-
Ser
GCT
[ENA]
¡û
>W2011504841
RYDI01000007
Bacteroidota
Flavobacterium sp. LS1P28 [RYDI]
115384
115300
-
Ser
GCT
[ENA]
¡û
>W2011504888
RYDJ01000007
Bacteroidota
Flavobacterium sp. RB1N8 [RYDJ]
34987
35071
+
Ser
GCT
[ENA]
¡û
>W2011504938
RYDK01000007
Bacteroidota
Flavobacterium sp. ZB4P23 [RYDK]
130779
130695
-
Ser
GCT
[ENA]
¡û
>W2011504958
RYDL01000003
Bacteroidota
Flavobacterium sp. RSP15 [RYDL]
46199
46115
-
Ser
GCT
[ENA]
¡û
>W2011505009
RYDM01000003
Bacteroidota
Flavobacterium sp. RSP46 [RYDM]
116936
116852
-
Ser
GCT
[ENA]
¡û
>W2011505064
RYDN01000048
Bacteroidota
Flavobacterium sp. RSP49 [RYDN]
3898
3814
-
Ser
GCT
[ENA]
¡û
>W2011505085
RYDO01000003
Bacteroidota
Flavobacterium sp. GSP6 [RYDO]
365612
365696
+
Ser
GCT
[ENA]
¡û
>W2011505119
RYDP01000005
Bacteroidota
Flavobacterium sp. GSP27 [RYDP]
126474
126558
+
Ser
GCT
[ENA]
¡û
>W2011633270
SMFM01000002
Bacteroidota
Flavobacterium sp. AT-3-2 [SMFM]
59048
58964
-
Ser
GCT
[ENA]
¡û
>W2011633317
SMFN01000014
Bacteroidota
Flavobacterium sp. LB-D12 [SMFN]
88026
87942
-
Ser
GCT
[ENA]
¡û
>W2011633373
SMFO01000016
Bacteroidota
Flavobacterium sp. TSA-D2 [SMFO]
1404
1320
-
Ser
GCT
[ENA]
¡û
>W2011637057
SMLF01000006
Bacteroidota
Flavobacterium sp. GT3P67 [SMLF]
74380
74296
-
Ser
GCT
[ENA]
¡û
>W2011637087
SMLG01000004
Bacteroidota
Flavobacterium sp. LB3P52 [SMLG]
215887
215971
+
Ser
GCT
[ENA]
¡û
>W2011637139
SMLH01000007
Bacteroidota
Flavobacterium sp. LB2P22 [SMLH]
103227
103311
+
Ser
GCT
[ENA]
¡û
>W2012031797
VHLM01000032
Bacteroidota
Flavobacterium sp. I-STPP5a [VHLM]
31060
30976
-
Ser
GCT
[ENA]
¡û
>W2012031880
VHLN01000122
Bacteroidota
Flavobacterium sp. I-STPA6A [VHLN]
31069
30985
-
Ser
GCT
[ENA]
¡û
>W2012066231
VJZL01000016
Bacteroidota
Flavobacterium sp. GSR22 [VJZL]
47923
47839
-
Ser
GCT
[ENA]
¡û
>W2012066277
VJZM01000018
Bacteroidota
Flavobacterium sp. GSR18 [VJZM]
33550
33634
+
Ser
GCT
[ENA]
¡û
>W2012066318
VJZN01000019
Bacteroidota
Flavobacterium sp. GSP39 [VJZN]
33550
33634
+
Ser
GCT
[ENA]
¡û
>W2012066354
VJZO01000016
Bacteroidota
Flavobacterium sp. GSP21 [VJZO]
47923
47839
-
Ser
GCT
[ENA]
¡û
>W2012066395
VJZP01000015
Bacteroidota
Flavobacterium sp. GSP16 [VJZP]
33552
33636
+
Ser
GCT
[ENA]
¡û
>W2012066520
VJZS01000010
Bacteroidota
Flavobacterium sp. ZT3R18 [VJZS]
42617
42701
+
Ser
GCT
[ENA]
¡û
>W2012066559
VJZT01000004
Bacteroidota
Flavobacterium sp. LB1R34 [VJZT]
141764
141680
-
Ser
GCT
[ENA]
¡û
>W2012081626
VLKO01000007
Bacteroidota
Flavobacterium tiangeerense CGMCC 1.6847 [VLKO]
96617
96533
-
Ser
GCT
[ENA]
¡û
>W2012082084
VLKX01000018
Bacteroidota
Flavobacterium glaciei CGMCC 1.5380 [VLKX]
47163
47079
-
Ser
GCT
[ENA]
¡û
>W2012102764
VOGZ02000005
Bacteroidota
Flavobacterium sp. XN-5 [VOGZ]
236902
236818
-
Ser
GCT
[ENA]
¡û
>W2110210813
JACFTC010000003
Bacteroidota
Flavobacterium sp. GP15 [JACFTC]
59925
60009
+
Ser
GCT
[ENA]
¡û
>W2110248878
JACRUI010000005
Bacteroidota
Flavobacterium kayseriense F-47 [JACRUI]
195492
195408
-
Ser
GCT
[ENA]
¡û
>W2110248921
JACRUJ010000005
Bacteroidota
Flavobacterium kayseriense F-380 [JACRUJ]
196557
196473
-
Ser
GCT
[ENA]
¡û
>W2110248952
JACRUK010000014
Bacteroidota
Flavobacterium muglaense F-60 [JACRUK]
2354
2438
+
Ser
GCT
[ENA]
¡û
>W2110248997
JACRUL010000015
Bacteroidota
Flavobacterium muglaense F-392 [JACRUL]
77892
77808
-
Ser
GCT
[ENA]
¡û
>W2110249037
JACRUM010000003
Bacteroidota
Flavobacterium turcicum F-400 [JACRUM]
236211
236295
+
Ser
GCT
[ENA]
¡û
>W2110358877
JADNRC010000010
Bacteroidota
Flavobacterium sp. ALJ2 [JADNRC]
85349
85265
-
Ser
GCT
[ENA]
¡û
>W2110363468
JADOVC010000009
Bacteroidota
Flavobacterium sp. CG_9.1 [JADOVC]
21859
21775
-
Ser
GCT
[ENA]
¡û
>W2110363519
JADOVD010000017
Bacteroidota
Flavobacterium sp. CG_9.10 [JADOVD]
5217
5133
-
Ser
GCT
[ENA]
¡û
>W2110532814
JAGFBU010000004
Bacteroidota
Flavobacterium sp. P4023 [JAGFBU]
81382
81466
+
Ser
GCT
[ENA]
¡û
>W2110541251
JAGGNA010000001
Bacteroidota
Flavobacterium sp. CG_23.5 [JAGGNA]
828100
828016
-
Ser
GCT
[ENA]
¡û
>W2110563433
JAGPXB010000003
Bacteroidota
Flavobacterium erciyesense F-328 [JAGPXB]
92891
92807
-
Ser
GCT
[ENA]
¡û
>W2110659148
JAHWYN010000025
Bacteroidota
Flavobacterium sp. NAS39 [JAHWYN]
20686
20602
-
Ser
GCT
[ENA]
¡û
>C201225268
CP049329
Bacteroidota
Flavobacterium sp. Sr18 [CP049329]
595750
595666
-
Ser
GCT
-
¡û
>C211385971
CP081492
Bacteroidota
Flavobacterium sp. CHNK8 [CP081492]
1316069
1316153
+
Ser
GCT
-
¡û
>C231077226
CP056783
Bacteroidota
Flavobacterium sp. K5-23 [CP056783]
3040126
3040042
-
Ser
GCT
-
¡û
>C231235331
CP087135
Bacteroidota
Flavobacterium sp. F-340 [CP087135]
2988755
2988671
-
Ser
GCT
-
¡û
>W2110750774
MQTN01000002
Bacteroidota
Flavobacterium sp. PL002 PL0002 [MQTN]
2721
2637
-
Ser
GCT
[ENA]
¡û
>C231525280
CP110009
Bacteroidota
Flavobacterium sp. N3904 [CP110009]
3584198
3584114
-
Ser
GCT
-
¡û
>C231553986
CP113948
Bacteroidota
Flavobacterium sp. IMCC34515 [CP113948]
1435961
1435877
-
Ser
GCT
-
¡û
>C231558226
CP114284
Bacteroidota
Flavobacterium sp. IMCC34518 [CP114284]
3687001
3687085
+
Ser
GCT
-
¡û
>C231563084
CP114882
Bacteroidota
Flavobacterium sp. IMCC36792 [CP114882]
2390166
2390250
+
Ser
GCT
-
¡û
>C231652925
OU957226
Bacteroidota
Flavobacterium sp. CECT 9288 [OU957226, OU957227]
1103605
1103689
+
Ser
GCT
-
¡û
>W1511390931
JSYM01000002
Bacteroidota
Flavobacterium sp. AED [JSYM]
465362
465446
+
Ser
GCT
[ENA]
¡û
>W1511391006
JSYO01000011
Bacteroidota
Flavobacterium sp. JRM [JSYO]
74572
74486
-
Ser
GCT
[ENA]
¡û
>W1511391084
JSYP01000007
Bacteroidota
Flavobacterium sp. KMS [JSYP]
114402
114316
-
Ser
GCT
[ENA]
¡û
>W121034215
AHKF01000020
Bacteroidota
Flavobacterium frigoris PS1 [AHKF]
209045
209129
+
Ser
GCT
[ENA]
¡û
>W1610950030
LVEP01000024
Bacteroidota
Flavobacterium crassostreae LPB0076 [LVEP]
594
510
-
Ser
GCT
[ENA]
¡û
>W1610957704
LVJE01000010
Bacteroidota
Flavobacterium fryxellicola [LVJE]
476312
476396
+
Ser
GCT
[ENA]
¡û
>W1710517109
FNDB01000011
Bacteroidota
Flavobacterium omnivorum [FNDB]
81767
81851
+
Ser
GCT
[ENA]
¡û
>W1710528016
FNMV01000002
Bacteroidota
Flavobacterium degerlachei [FNMV]
1701
1617
-
Ser
GCT
[ENA]
¡û
>W1710533473
FNRD01000003
Bacteroidota
Flavobacterium gillisiae [FNRD]
262251
262167
-
Ser
GCT
[ENA]
¡û
>W1710539687
FNVP01000008
Bacteroidota
Flavobacterium urumqiense [FNVP]
48421
48505
+
Ser
GCT
[ENA]
¡û
>W1710548155
FODN01000004
Bacteroidota
Flavobacterium sinopsychrotolerans [FODN]
166780
166696
-
Ser
GCT
[ENA]
¡û
>W1710551327
FOFZ01000003
Bacteroidota
Flavobacterium frigoris [FOFZ]
242323
242239
-
Ser
GCT
[ENA]
¡û
>W1710560758
FONQ01000006
Bacteroidota
Flavobacterium xueshanense [FONQ]
88340
88424
+
Ser
GCT
[ENA]
¡û
>W1710585191
FQWE01000001
Bacteroidota
Flavobacterium segetis [FQWE]
5775
5691
-
Ser
GCT
[ENA]
¡û
>W1710585231
FQWF01000004
Bacteroidota
Flavobacterium micromati [FQWF]
23155
23239
+
Ser
GCT
[ENA]
¡û
>W1710585703
FQWO01000001
Bacteroidota
Flavobacterium granuli [FQWO]
38970
38886
-
Ser
GCT
[ENA]
¡û
>W1710591578
FRBU01000081
Bacteroidota
Flavobacterium xanthum [FRBU]
861
777
-
Ser
GCT
[ENA]
¡û
>W1710592436
FRCL01000018
Bacteroidota
Flavobacterium xinjiangense [FRCL]
2611
2695
+
Ser
GCT
[ENA]
¡û
>W1710593389
FRDK01000002
Bacteroidota
Flavobacterium fryxellicola [FRDK]
91852
91768
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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