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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.65244 (8 seq.)
>WENV180294273
OBIY01057592
[OBIY] beach sand metagenome; beach sand
88
2
-
Leu
CAG
[ENA]
¡û
>WENV170962413
MRWF01015368
[MRWF] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
4761
4847
+
Leu
CAG
[ENA]
¡û
>WENV170963331
MRWG01000108
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
101365
101451
+
Leu
CAG
[ENA]
¡û
>W1810110839
PHIG01000018
Alphaproteobacteria
Minwuia thermotolerans SY3-13 [PHIG]
151865
151951
+
Leu
CAG
[ENA]
¡û
>W1810138058
PIGG01000037
Alphaproteobacteria
Minwuia thermotolerans SY3-15 [PIGG]
151871
151957
+
Leu
CAG
[ENA]
¡û
>C241250164
CP123781
Alphaproteobacteria
Minwuia sp. IMCC3009 [CP123781]
2927777
2927691
-
Leu
CAG
-
¡û
>C241250211
CP123782
Alphaproteobacteria
Minwuia sp. IMCC3060 [CP123782]
2980500
2980414
-
Leu
CAG
-
¡û
>C161094015
CP016093
Alphaproteobacteria
Rhizobiales bacterium NRL2 [CP016093]
504703
504789
+
Leu
CAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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