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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.65310 (91 seq.)
>W1711688917
MSDP01000013
Gammaproteobacteria
Salinicola sp. MH3R3-1 [MSDP]
92
178
+
Leu
CAG
[ENA]
¡û
>W1711688963
MSDP01000085
Gammaproteobacteria
Salinicola sp. MH3R3-1 [MSDP]
725
811
+
Leu
CAG
[ENA]
¡û
>W1711750443
MUMZ01000020
Gammaproteobacteria
Halomonas desiderata SP1 [MUMZ]
24917
25003
+
Leu
CAG
[ENA]
¡û
>W1711957919
NBVS01000003
Gammaproteobacteria
Cobetia sp. QF-1 [NBVS]
339161
339247
+
Leu
CAG
[ENA]
¡û
>C171057406
CP017114
Gammaproteobacteria
Cobetia marina JCM 21022 [CP017114]
3798641
3798727
+
Leu
CAG
-
¡û
>C171073677
CP018139
Gammaproteobacteria
Halomonas aestuarii Hb3 [CP018139]
2441639
2441553
-
Leu
CAG
-
¡û
>WENV180381423
OBOR01290665
[OBOR] marine metagenome; ENVO 00002227
190
104
-
Leu
CAG
[ENA]
¡û
>W141212708
AZQX01000363
Gammaproteobacteria
Halomonas sp. BC04 [AZQX]
7397
7311
-
Leu
CAG
[ENA]
¡û
>WENV170249439
CEQS01013272
[CEQS] marine metagenome genome assembly TARA_072_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
170
256
+
Leu
CAG
[ENA]
¡û
>WENV170332502
CESW01191946
[CESW] marine metagenome genome assembly TARA_096_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
205
291
+
Leu
CAG
[ENA]
¡û
>WENV170361532
CETM01012410
[CETM] marine metagenome genome assembly TARA_122_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
51194
51280
+
Leu
CAG
[ENA]
¡û
>WENV170382551
CETX01025665
[CETX] marine metagenome genome assembly TARA_138_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
171
257
+
Leu
CAG
[ENA]
¡û
>WENV170657502
JTFO01171080
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
271
185
-
Leu
CAG
[ENA]
¡û
>WENV170679831
LFCJ01000690
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
18171
18085
-
Leu
CAG
[ENA]
¡û
>WENV170679832
LFCJ01000690
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
18044
17958
-
Leu
CAG
[ENA]
¡û
>W141557588
JHVH01000001
Gammaproteobacteria
Halomonas halodenitrificans DSM 735 [JHVH]
32951
33037
+
Leu
CAG
[ENA]
¡û
>W141727058
JNCK01000001
Gammaproteobacteria
Halomonas zincidurans B6 [JNCK]
147466
147380
-
Leu
CAG
[ENA]
¡û
>W1810062634
PDOG01000002
Gammaproteobacteria
Halomonas sp. LBP4 [PDOG]
507016
506930
-
Leu
CAG
[ENA]
¡û
>W1810062669
PDOH01000001
Gammaproteobacteria
Halomonas heilongjiangensis 9-2 [PDOH]
59997
60083
+
Leu
CAG
[ENA]
¡û
>W1810177431
PJRN01000004
Gammaproteobacteria
Halomonas saliphila LCB169 [PJRN]
59644
59730
+
Leu
CAG
[ENA]
¡û
>W1810177433
PJRN01000004
Gammaproteobacteria
Halomonas saliphila LCB169 [PJRN]
59912
59998
+
Leu
CAG
[ENA]
¡û
>W1810199946
PNRE01000036
Gammaproteobacteria
Halomonas heilongjiangensis DSM 26881 [PNRE]
59438
59524
+
Leu
CAG
[ENA]
¡û
>W1810200062
PNRG01000025
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27 [PNRG]
124
210
+
Leu
CAG
[ENA]
¡û
>W1810200081
PNRG01000033
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27 [PNRG]
246
160
-
Leu
CAG
[ENA]
¡û
>W1810364754
PVTM01000006
Gammaproteobacteria
Halomonas ventosae USBA 854 [PVTM]
58787
58873
+
Leu
CAG
[ENA]
¡û
>W1810423955
PYUD01000001
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27T [PYUD]
236850
236764
-
Leu
CAG
[ENA]
¡û
>W1810423956
PYUD01000001
Gammaproteobacteria
Halomonas urumqiensis BZ-SZ-XJ27T [PYUD]
236685
236599
-
Leu
CAG
[ENA]
¡û
>W1810426073
PYVX01000001
Gammaproteobacteria
Halomonas denitrificans DSM 18045 [PYVX]
1084575
1084661
+
Leu
CAG
[ENA]
¡û
>W1810444129
PZJL01000008
Gammaproteobacteria
Salinicola sp. CR57 [PZJL]
71965
71879
-
Leu
CAG
[ENA]
¡û
>W1810444130
PZJL01000008
Gammaproteobacteria
Salinicola sp. CR57 [PZJL]
71831
71745
-
Leu
CAG
[ENA]
¡û
>W1810444202
PZJM01000013
Gammaproteobacteria
Salinicola lusitanus CR50 [PZJM]
71947
71861
-
Leu
CAG
[ENA]
¡û
>W1810444212
PZJN01000001
Gammaproteobacteria
Salinicola halophyticus CR45 [PZJN]
194993
195079
+
Leu
CAG
[ENA]
¡û
>W1810444791
PZJW01000005
Gammaproteobacteria
Salinicola acroporae LMG 28587 [PZJW]
218811
218897
+
Leu
CAG
[ENA]
¡û
>W1810608647
QGTM01000002
Gammaproteobacteria
Halomonas sp. A11-A [QGTM]
156493
156407
-
Leu
CAG
[ENA]
¡û
>W1810722061
QNTU01000007
Gammaproteobacteria
Halomonas sulfidaeris SST4 [QNTU]
171602
171516
-
Leu
CAG
[ENA]
¡û
>W1810758252
QPII01000014
Gammaproteobacteria
Halomonas montanilacus PYC7W [QPII]
58087
58001
-
Leu
CAG
[ENA]
¡û
>W2010303671
CABVOU010000029
Gammaproteobacteria
Halomonas sp. 3(2) [CABVOU]
5132
5046
-
Leu
CAG
[ENA]
¡û
>W2010537950
JAAQTN010000037
Gammaproteobacteria
Halomonas desiderata FB2 [JAAQTN]
14945
14859
-
Leu
CAG
[ENA]
¡û
>W2010537989
JAAQTO010000010
Gammaproteobacteria
Halomonas sp. DX6 [JAAQTO]
56886
56972
+
Leu
CAG
[ENA]
¡û
>W2010537990
JAAQTO010000011
Gammaproteobacteria
Halomonas sp. DX6 [JAAQTO]
2
88
+
Leu
CAG
[ENA]
¡û
>W2010681361
JACEFT010000017
Gammaproteobacteria
Halomonas kenyensis DSM 17331 [JACEFT]
58959
59045
+
Leu
CAG
[ENA]
¡û
>W2010681362
JACEFT010000017
Gammaproteobacteria
Halomonas kenyensis DSM 17331 [JACEFT]
59109
59195
+
Leu
CAG
[ENA]
¡û
>W2010716874
JACHXQ010000005
Gammaproteobacteria
Halomonas fontilapidosi CECT 7341 [JACHXQ]
178843
178929
+
Leu
CAG
[ENA]
¡û
>W2010719031
JACHZF010000006
Gammaproteobacteria
Halomonas campaniensis 5AG [JACHZF]
113650
113736
+
Leu
CAG
[ENA]
¡û
>W2011617458
SLTR01000017
Gammaproteobacteria
Halomonas sp. 204 [SLTR]
43853
43939
+
Leu
CAG
[ENA]
¡û
>W2011647693
SNWH01000006
Gammaproteobacteria
Halomonas ventosae 1_TX [SNWH]
86347
86261
-
Leu
CAG
[ENA]
¡û
>W2011651872
SNZJ01000012
Gammaproteobacteria
Halomonas ventosae CECT 5797 [SNZJ]
58915
58829
-
Leu
CAG
[ENA]
¡û
>W2011703665
SWFN01000003
Gammaproteobacteria
Cobetia marina T1 [SWFN]
337969
338055
+
Leu
CAG
[ENA]
¡û
>W2011966789
VBUI01000010
Gammaproteobacteria
Halomonas sp. TBZ3 [VBUI]
9722
9636
-
Leu
CAG
[ENA]
¡û
>W2012141852
VTPX01000013
Gammaproteobacteria
Salinicola sp. L3 [VTPX]
71298
71212
-
Leu
CAG
[ENA]
¡û
>W2012141887
VTPY01000004
Gammaproteobacteria
Halomonas sp. L5 [VTPY]
57198
57284
+
Leu
CAG
[ENA]
¡û
>W2012446491
WUTS01000001
Gammaproteobacteria
Halomonas sp. D1-1 [WUTS]
2756599
2756685
+
Leu
CAG
[ENA]
¡û
>W2012446576
WUTT01000001
Gammaproteobacteria
Halomonas alimentaria DSM 15356 [WUTT]
1214323
1214237
-
Leu
CAG
[ENA]
¡û
>W2110050311
BMZI01000003
Gammaproteobacteria
Salinicola rhizosphaerae KCTC 32998 [BMZI]
209720
209806
+
Leu
CAG
[ENA]
¡û
>W2110051354
BNAE01000001
Gammaproteobacteria
Halomonas urumqiensis CGMCC 1.12917 [BNAE]
1429425
1429511
+
Leu
CAG
[ENA]
¡û
>W2110051355
BNAE01000001
Gammaproteobacteria
Halomonas urumqiensis CGMCC 1.12917 [BNAE]
1429590
1429676
+
Leu
CAG
[ENA]
¡û
>W2110240385
JACNMQ010000001
Gammaproteobacteria
Halomonas sp. M20 [JACNMQ]
281983
281897
-
Leu
CAG
[ENA]
¡û
>W2110240386
JACNMQ010000001
Gammaproteobacteria
Halomonas sp. M20 [JACNMQ]
281860
281774
-
Leu
CAG
[ENA]
¡û
>W2110358994
JADNRL010000024
Gammaproteobacteria
Halomonas sp. KAO [JADNRL]
176335
176249
-
Leu
CAG
[ENA]
¡û
>W2110663840
JAHYCA010000002
Gammaproteobacteria
Halomonas sp. Y3S6 [JAHYCA]
565127
565041
-
Leu
CAG
[ENA]
¡û
>C201000638
AP019514
Gammaproteobacteria
Halomonas sulfidaeris ATCC BAA-803 [AP019514]
2758266
2758352
+
Leu
CAG
-
¡û
>C201059478
CP035042
Gammaproteobacteria
Halomonas sp. BC-M4-5 [CP035042]
1160777
1160691
-
Leu
CAG
-
¡û
>C201059479
CP035042
Gammaproteobacteria
Halomonas sp. BC-M4-5 [CP035042]
1160644
1160558
-
Leu
CAG
-
¡û
>C211062677
CP044522
Gammaproteobacteria
Cobetia sp. cqz5-12 [CP044522]
339550
339464
-
Leu
CAG
-
¡û
>C211093726
CP053382
Gammaproteobacteria
Halomonas sp. MCCC 1A13316 [CP053382]
955350
955264
-
Leu
CAG
-
¡û
>C211093791
CP053383
Gammaproteobacteria
Halomonas sp. MCCC 1A13718 [CP053383]
969534
969448
-
Leu
CAG
-
¡û
>C211407029
CP084115
Gammaproteobacteria
Cobetia amphilecti N-80 [CP084115]
366310
366224
-
Leu
CAG
-
¡û
>W1510071596
CDGR01000103
Gammaproteobacteria
Halomonas salina B6 [CDGR]
84348
84262
-
Leu
CAG
[ENA]
¡û
>C231421801
CP099975
Gammaproteobacteria
Halomonas sp. Y3 [CP099975]
890086
890000
-
Leu
CAG
-
¡û
>C231426082
CP100360
Gammaproteobacteria
Halomonas sp. 3H [CP100360]
720035
719949
-
Leu
CAG
-
¡û
>C231507472
CP107009
Gammaproteobacteria
Halomonas sp. LR3S48 [CP107009]
1130650
1130564
-
Leu
CAG
-
¡û
>C231637884
CP121193
Gammaproteobacteria
Halomonas sp. CKK8 [CP121193]
3077925
3078011
+
Leu
CAG
-
¡û
>C241004278
AP021868
Gammaproteobacteria
Cobetia sp. AM6 [AP021868]
365460
365374
-
Leu
CAG
-
¡û
>C241096280
CP045417
Gammaproteobacteria
Halomonas sp. THAF5a [CP045417]
683246
683160
-
Leu
CAG
-
¡û
>C241114875
CP047025
Gammaproteobacteria
Cobetia sp. L2A1 [CP047025]
333033
332947
-
Leu
CAG
-
¡û
>C241153830
CP053032
Gammaproteobacteria
Halomonas sp. PGE1 [CP053032]
1130435
1130349
-
Leu
CAG
-
¡û
>C241292969
CP130143
Gammaproteobacteria
Halomonas alkalicola M2 [CP130143]
810289
810203
-
Leu
CAG
-
¡û
>C241297765
CP131913
Gammaproteobacteria
Halomonas alkalicola CICC 11012s [CP131913]
1421524
1421610
+
Leu
CAG
-
¡û
>C241329233
CP136695
Gammaproteobacteria
Cobetia amphilecti CI.11.F.A3 [CP136695]
709498
709412
-
Leu
CAG
-
¡û
>C241369657
CP142020
Gammaproteobacteria
Cobetia sp. D5 [CP142020]
342568
342482
-
Leu
CAG
-
¡û
>W1511053621
JIBT01000006
Gammaproteobacteria
Halomonas sp. PR-M31 [JIBT]
114336
114422
+
Leu
CAG
[ENA]
¡û
>W1511053622
JIBT01000006
Gammaproteobacteria
Halomonas sp. PR-M31 [JIBT]
114459
114545
+
Leu
CAG
[ENA]
¡û
>W1511319657
JPZL01000001
Gammaproteobacteria
Halomonas xinjiangensis TRM 0175 [JPZL]
1337173
1337259
+
Leu
CAG
[ENA]
¡û
>W121123970
BAEU01000154
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
60083
60169
+
Leu
CAG
[ENA]
¡û
>W121123971
BAEU01000154
Gammaproteobacteria
Halomonas sp. KM-1 [BAEU]
60249
60335
+
Leu
CAG
[ENA]
¡û
>W1710521355
FNGI01000002
Gammaproteobacteria
Halomonas muralis [FNGI]
470554
470640
+
Leu
CAG
[ENA]
¡û
>W1710521356
FNGI01000002
Gammaproteobacteria
Halomonas muralis [FNGI]
470672
470758
+
Leu
CAG
[ENA]
¡û
>W1710539151
FNVC01000005
Gammaproteobacteria
Halomonas desiderata daqingensis [FNVC]
173286
173200
-
Leu
CAG
[ENA]
¡û
>W1710544863
FOBC01000007
Gammaproteobacteria
Halomonas daqiaonensis [FOBC]
147299
147213
-
Leu
CAG
[ENA]
¡û
>W1710577172
FPAQ01000005
Gammaproteobacteria
Halomonas saccharevitans [FPAQ]
88499
88413
-
Leu
CAG
[ENA]
¡û
>W1710577173
FPAQ01000005
Gammaproteobacteria
Halomonas saccharevitans [FPAQ]
88370
88284
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK