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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.65345 (51 seq.)
>W1711484253
MKCO01000001
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
937484
937570
+
Leu
TAA
[ENA]
¡û
>W1711484258
MKCO01000001
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
1054812
1054898
+
Leu
TAA
[ENA]
¡û
>W1711484292
MKCO01000028
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
852
766
-
Leu
TAA
[ENA]
¡û
>W1711484295
MKCO01000028
Campylobacterota
Poseidonibacter lekithochrous LFT 1.7 [MKCO]
326
240
-
Leu
TAA
[ENA]
¡û
>C171088957
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
2685007
2684921
-
Leu
TAA
-
¡û
>C171088988
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
1211041
1210955
-
Leu
TAA
-
¡û
>C171088994
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
1115583
1115497
-
Leu
TAA
-
¡û
>WENV180043323
LQAH01028934
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
463
377
-
Leu
TAA
[ENA]
¡û
>WENV180043718
LQAI01011857
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
257
343
+
Leu
TAA
[ENA]
¡û
>WENV180277023
OBHV01034883
[OBHV] metagenome; water
124
38
-
Leu
TAA
[ENA]
¡û
>WENV180287577
OBIK01135895
[OBIK] hydrothermal vent metagenome; sea water
175
89
-
Leu
TAA
[ENA]
¡û
>WENV180288144
OBIL01061635
[OBIL] metagenome; hydrothermal vent
215
129
-
Leu
TAA
[ENA]
¡û
>WENV180317324
OBKJ01114750
[OBKJ] metagenome; hydrothermal vent
29
115
+
Leu
TAA
[ENA]
¡û
>WENV180634422
OCRB01008299
[OCRB] metagenome; diffuse fluid
698
612
-
Leu
TAA
[ENA]
¡û
>WENV180648216
OCSI01127213
[OCSI] metagenome; diffuse fluid
230
144
-
Leu
TAA
[ENA]
¡û
>WENV181209490
OFBE01004625
[OFBE] metagenome; hydrothermal vent
335
249
-
Leu
TAA
[ENA]
¡û
>WENV181211435
OFBK01005692
[OFBK] metagenome; hydrothermal vent
659
745
+
Leu
TAA
[ENA]
¡û
>WENV181213622
OFBV01014616
[OFBV] metagenome; hydrothermal vent
454
540
+
Leu
TAA
[ENA]
¡û
>WENV181214212
OFBW01025296
[OFBW] metagenome; hydrothermal vent
250
336
+
Leu
TAA
[ENA]
¡û
>WENV181215084
OFBZ01003060
[OFBZ] metagenome; hydrothermal vent
1748
1662
-
Leu
TAA
[ENA]
¡û
>WENV181215886
OFCA01031139
[OFCA] metagenome; hydrothermal vent
448
362
-
Leu
TAA
[ENA]
¡û
>WENV181226470
OFDL01003217
[OFDL] metagenome; hydrothermal vent
456
542
+
Leu
TAA
[ENA]
¡û
>WENV182568364
OJET01005200
[OJET] seawater metagenome; Sea water
151
237
+
Leu
TAA
[ENA]
¡û
>WENV182579755
OJGT01000707
[OJGT] seawater metagenome; Sea water
878
964
+
Leu
TAA
[ENA]
¡û
>WENV182590624
OJIJ01000612
[OJIJ] seawater metagenome; Sea water
3469
3555
+
Leu
TAA
[ENA]
¡û
>WENV183058333
OLHP01012095
[OLHP] seawater metagenome; Sea water
253
167
-
Leu
TAA
[ENA]
¡û
>WENV183705151
PDWI01001142
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
42901
42987
+
Leu
TAA
[ENA]
¡û
>WENV183719188
PDWJ01010527
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
89
3
-
Leu
TAA
[ENA]
¡û
>WENV170646403
JQGR01001633
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
1358
1444
+
Leu
TAA
[ENA]
¡û
>WENV170704224
LLEJ01000235
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
685
599
-
Leu
TAA
[ENA]
¡û
>WENV170704383
LLEK01000004
[LLEK] bioreactor metagenome; day79 25degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
57443
57357
-
Leu
TAA
[ENA]
¡û
>WENV170704604
LLEL01008415
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
321
235
-
Leu
TAA
[ENA]
¡û
>WENV170704671
LLEL01029336
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
33
119
+
Leu
TAA
[ENA]
¡û
>WENV170704876
LLEN01007845
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
99
185
+
Leu
TAA
[ENA]
¡û
>W1810462580
PZYW01000012
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
52419
52505
+
Leu
TAA
[ENA]
¡û
>W1810462583
PZYW01000012
Campylobacterota
Poseidonibacter lekithochrous LMG 28652 [PZYW]
52945
53031
+
Leu
TAA
[ENA]
¡û
>W2011403978
RCWF01000001
Campylobacterota
Arcobacter sp. SM1702 [RCWF]
324652
324738
+
Leu
TAA
[ENA]
¡û
>W2011403986
RCWF01000002
Campylobacterota
Arcobacter sp. SM1702 [RCWF]
292351
292437
+
Leu
TAA
[ENA]
¡û
>W2011404008
RCWF01000008
Campylobacterota
Arcobacter sp. SM1702 [RCWF]
89
3
-
Leu
TAA
[ENA]
¡û
>W2012324531
WFKI01000001
Campylobacterota
Poseidonibacter sp. JOD-M-6 [WFKI]
87929
88015
+
Leu
TAA
[ENA]
¡û
>W2012324605
WFKJ01000117
Campylobacterota
Poseidonibacter sp. SJOD-M-5 [WFKJ]
151
65
-
Leu
TAA
[ENA]
¡û
>W2012324611
WFKJ01000139
Campylobacterota
Poseidonibacter sp. SJOD-M-5 [WFKJ]
334
248
-
Leu
TAA
[ENA]
¡û
>W2012324653
WFKK01000133
Campylobacterota
Poseidonibacter sp. SJOD-M-33 [WFKK]
593
679
+
Leu
TAA
[ENA]
¡û
>W2012324659
WFKK01000164
Campylobacterota
Poseidonibacter sp. SJOD-M-33 [WFKK]
334
248
-
Leu
TAA
[ENA]
¡û
>W2110612929
JAHKQT010000001
Campylobacterota
Poseidonibacter lekithochrous A1R12 [JAHKQT]
103692
103778
+
Leu
TAA
[ENA]
¡û
>W2110612952
JAHKQT010000041
Campylobacterota
Poseidonibacter lekithochrous A1R12 [JAHKQT]
42160
42246
+
Leu
TAA
[ENA]
¡û
>C241165588
CP054052
Campylobacterota
Poseidonibacter lekithochrous DSM 100870 [CP054052]
3339321
3339235
-
Leu
TAA
-
¡û
>C241165591
CP054052
Campylobacterota
Poseidonibacter lekithochrous DSM 100870 [CP054052]
3338792
3338706
-
Leu
TAA
-
¡û
>C241165630
CP054052
Campylobacterota
Poseidonibacter lekithochrous DSM 100870 [CP054052]
1454810
1454724
-
Leu
TAA
-
¡û
>C241165635
CP054052
Campylobacterota
Poseidonibacter lekithochrous DSM 100870 [CP054052]
1337479
1337393
-
Leu
TAA
-
¡û
>W1710082864
BDIR01000013
Campylobacterota
Arcobacter sp. LA11 [BDIR]
22734
22648
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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