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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653478 (85 seq.)
>W1711938093
NAQL01000014
Actinomycetota
Bifidobacterium longum [NAQL]
30731
30805
+
Trp
CCA
[ENA]
¡û
>WENV180128660
OATB01000633
[OATB] human gut metagenome; faeces
7420
7348
-
Trp
CCA
[ENA]
¢þ
>WENV180132239
OATH01003402
[OATH] human gut metagenome; faeces
541
613
+
Trp
CCA
[ENA]
¢þ
>WENV180132625
OATI01000348
[OATI] human gut metagenome; faeces
11461
11389
-
Trp
CCA
[ENA]
¢þ
>WENV180134222
OATJ01084911
[OATJ] human gut metagenome; faeces
61
133
+
Trp
CCA
[ENA]
¢þ
>WENV180137741
OATP01000367
[OATP] human gut metagenome; faeces
17632
17704
+
Trp
CCA
[ENA]
¢þ
>WENV180138809
OATR01000007
[OATR] human gut metagenome; faeces
55399
55471
+
Trp
CCA
[ENA]
¢þ
>WENV180139809
OATT01000978
[OATT] human gut metagenome; faeces
7420
7348
-
Trp
CCA
[ENA]
¢þ
>WENV180149472
OAUL01001082
[OAUL] human gut metagenome; faeces
2548
2620
+
Trp
CCA
[ENA]
¢þ
>WENV180158213
OAUY01005648
[OAUY] human gut metagenome; faeces
509
581
+
Trp
CCA
[ENA]
¢þ
>WENV180161556
OAVE01000239
[OAVE] human gut metagenome; faeces
18307
18379
+
Trp
CCA
[ENA]
¢þ
>WENV180167631
OAVP01000076
[OAVP] human gut metagenome; faeces
62241
62313
+
Trp
CCA
[ENA]
¢þ
>WENV180168235
OAVQ01000088
[OAVQ] human gut metagenome; faeces
13816
13744
-
Trp
CCA
[ENA]
¢þ
>WENV180180421
OAWK01000231
[OAWK] human gut metagenome; faeces
932
1004
+
Trp
CCA
[ENA]
¢þ
>WENV180432997
OBWJ01000232
[OBWJ] human gut metagenome; faeces
40504
40576
+
Trp
CCA
[ENA]
¢þ
>WENV180433633
OBWK01000047
[OBWK] human gut metagenome; faeces
11495
11423
-
Trp
CCA
[ENA]
¢þ
>WENV180445094
OBXA01001404
[OBXA] human gut metagenome; faeces
9264
9336
+
Trp
CCA
[ENA]
¢þ
>WENV180459591
OBXX01000724
[OBXX] human gut metagenome; faeces
438
366
-
Trp
CCA
[ENA]
¢þ
>WENV180467485
OBYI01000437
[OBYI] human gut metagenome; faeces
11157
11229
+
Trp
CCA
[ENA]
¢þ
>WENV180468070
OBYJ01000329
[OBYJ] human gut metagenome; faeces
13825
13753
-
Trp
CCA
[ENA]
¢þ
>WENV180476537
OBYY01000027
[OBYY] human gut metagenome; faeces
18307
18379
+
Trp
CCA
[ENA]
¢þ
>WENV180490308
OBZU01000070
[OBZU] human gut metagenome; faeces
19948
19876
-
Trp
CCA
[ENA]
¢þ
>WENV180596617
OCPI01000140
[OCPI] human gut metagenome; faeces
26542
26470
-
Trp
CCA
[ENA]
¢þ
>WENV180867168
ODLK01000240
[ODLK] human metagenome; G_DNA_Stool
7719
7647
-
Trp
CCA
[ENA]
¢þ
>WENV180965500
ODUP01001833
[ODUP] human metagenome; G_DNA_Stool
7596
7524
-
Trp
CCA
[ENA]
¢þ
>WENV181216988
OFCH01000008
[OFCH] metagenome; Human gut stool
118296
118368
+
Trp
CCA
[ENA]
¢þ
>WENV181218308
OFCM01000137
[OFCM] metagenome; Human gut stool
29928
30000
+
Trp
CCA
[ENA]
¢þ
>WENV181220140
OFCQ01000109
[OFCQ] metagenome; Human gut stool
21747
21675
-
Trp
CCA
[ENA]
¢þ
>WENV181225674
OFDJ01000012
[OFDJ] metagenome; Human gut stool
21747
21675
-
Trp
CCA
[ENA]
¢þ
>WENV181330575
OFLY01033829
[OFLY] human gut metagenome; human gut
378
450
+
Trp
CCA
[ENA]
¢þ
>WENV181331245
OFLZ01001265
[OFLZ] human gut metagenome; human gut
2021
1949
-
Trp
CCA
[ENA]
¢þ
>WENV181332866
OFMA01009961
[OFMA] human gut metagenome; human gut
211
139
-
Trp
CCA
[ENA]
¢þ
>WENV181395300
OFRZ01028558
[OFRZ] human gut metagenome; human gut
102
174
+
Trp
CCA
[ENA]
¢þ
>WENV181671464
OGON01001775
[OGON] human gut metagenome; faeces
9264
9336
+
Trp
CCA
[ENA]
¢þ
>WENV181747458
OGQN01034915
[OGQN] human gut metagenome; faeces
175
103
-
Trp
CCA
[ENA]
¢þ
>WENV181917540
OGYG01038107
[OGYG] human gut metagenome; faeces
504
432
-
Trp
CCA
[ENA]
¢þ
>WENV182815774
OJYU01000016
[OJYU] human gut metagenome; human gut
28087
28015
-
Trp
CCA
[ENA]
¢þ
>WENV182815961
OJYV01000069
[OJYV] human gut metagenome; human gut
17149
17221
+
Trp
CCA
[ENA]
¢þ
>WENV182821662
OKBA01000033
[OKBA] human gut metagenome; human gut
28087
28015
-
Trp
CCA
[ENA]
¢þ
>WENV182825025
OKCG01001052
[OKCG] human gut metagenome; human gut
4856
4784
-
Trp
CCA
[ENA]
¢þ
>WENV182827090
OKCX01000019
[OKCX] human gut metagenome; human gut
30343
30271
-
Trp
CCA
[ENA]
¢þ
>WENV182830510
OKDZ01000099
[OKDZ] human gut metagenome; human gut
17150
17222
+
Trp
CCA
[ENA]
¢þ
>WENV182832034
OKEJ01000064
[OKEJ] human gut metagenome; human gut
17149
17221
+
Trp
CCA
[ENA]
¢þ
>WENV182848399
OKKH01000008
[OKKH] human gut metagenome; human gut
50114
50042
-
Trp
CCA
[ENA]
¢þ
>WENV182860154
OKOR01000234
[OKOR] human gut metagenome; human gut
17150
17222
+
Trp
CCA
[ENA]
¢þ
>WENV182861302
OKPE01000036
[OKPE] human gut metagenome; human gut
17149
17221
+
Trp
CCA
[ENA]
¢þ
>WENV182865207
OKQJ01000050
[OKQJ] human gut metagenome; human gut
22685
22613
-
Trp
CCA
[ENA]
¢þ
>WENV182941673
OKVG01005068
[OKVG] human gut metagenome; human gut
1697
1769
+
Trp
CCA
[ENA]
¢þ
>WENV183083362
OLJB01056757
[OLJB] human gut metagenome; human gut
105
177
+
Trp
CCA
[ENA]
¢þ
>WENV183090424
OLKA01000002
[OLKA] human gut metagenome; human gut
22686
22614
-
Trp
CCA
[ENA]
¢þ
>WENV183142068
OLOJ01073074
[OLOJ] human gut metagenome; faeces
345
273
-
Trp
CCA
[ENA]
¢þ
>WENV183243325
OLRC01051627
[OLRC] human gut metagenome; faeces
424
496
+
Trp
CCA
[ENA]
¢þ
>WENV183538997
OOAI01000152
[OOAI] human gut metagenome; human gut
47129
47057
-
Trp
CCA
[ENA]
¢þ
>WENV183566411
OOCA01001073
[OOCA] human gut metagenome; human gut
11391
11319
-
Trp
CCA
[ENA]
¢þ
>WENV183790371
PPYF01411262
[PPYF] human gut metagenome; stool from patient with Crohn's disease
32973
33045
+
Trp
CCA
[ENA]
¢þ
>C191208479
LR134354
Actinomycetota
Bifidobacterium longum subsp. infantis NCTC11817 [LR134354]
1693637
1693709
+
Trp
CCA
-
¡û
>W1910343122
FTRM01000007
Actinomycetota
Bifidobacterium longum [FTRM]
21819
21747
-
Trp
CCA
[ENA]
¡û
>W1910343195
FTRN01000008
Actinomycetota
Bifidobacterium longum [FTRN]
118370
118442
+
Trp
CCA
[ENA]
¡û
>W1910343404
FTRR01000007
Actinomycetota
Bifidobacterium longum [FTRR]
21769
21697
-
Trp
CCA
[ENA]
¡û
>W1910923139
NIGS01000007
Actinomycetota
Bifidobacterium breve LMG S-29190 [NIGS]
190054
189982
-
Trp
CCA
[ENA]
¡û
>C09102389
CP001095
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [CP001095]
1693843
1693917
+
Trp
CCA
-
¡û
>W1911682515
QKOJ01000010
Actinomycetota
Bifidobacterium longum subsp. longum C11A10B [QKOJ]
70266
70338
+
Trp
CCA
[ENA]
¡û
>W1810833519
QSPU01000009
Actinomycetota
Bifidobacterium longum TM04-48B [QSPU]
20076
20004
-
Trp
CCA
[ENA]
¡û
>W1810833715
QSPY01000007
Actinomycetota
Bifidobacterium longum TM04-17 [QSPY]
20225
20153
-
Trp
CCA
[ENA]
¡û
>W1810835974
QSRO01000001
Actinomycetota
Bifidobacterium longum TF07-39 [QSRO]
262923
262851
-
Trp
CCA
[ENA]
¡û
>W1810836079
QSRQ01000001
Actinomycetota
Bifidobacterium longum TF07-31 [QSRQ]
36410
36338
-
Trp
CCA
[ENA]
¡û
>W1810836708
QSRZ01000010
Actinomycetota
Bifidobacterium longum TF06-45A [QSRZ]
119155
119227
+
Trp
CCA
[ENA]
¡û
>W1810836975
QSSF01000001
Actinomycetota
Bifidobacterium longum TF06-12AC [QSSF]
119166
119238
+
Trp
CCA
[ENA]
¡û
>C151011267
CP006713
Actinomycetota
Bifidobacterium breve JCM 7019 [CP006713]
1112067
1111993
-
Trp
CCA
[Ensembl]
¡û
>W1510059606
CCWN01000030
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1206122787 [CCWN]
36722
36796
+
Trp
CCA
[ENA]
¡û
>W1510059672
CCWO01000040
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1307292462 [CCWO]
36679
36753
+
Trp
CCA
[ENA]
¡û
>W1510059739
CCWP01000035
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401111250 [CCWP]
36686
36760
+
Trp
CCA
[ENA]
¡û
>W1510059806
CCWQ01000029
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621b [CCWQ]
36686
36760
+
Trp
CCA
[ENA]
¡û
>W1510059872
CCWR01000022
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845a [CCWR]
118322
118396
+
Trp
CCA
[ENA]
¡û
>W1510059939
CCWS01000025
Actinomycetota
Bifidobacterium longum subsp. infantis BIC1401212621a [CCWS]
118350
118424
+
Trp
CCA
[ENA]
¡û
>W1510060006
CCWT01000030
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401272845b [CCWT]
36686
36760
+
Trp
CCA
[ENA]
¡û
>W1510060073
CCWU01000024
Actinomycetota
Bifidobacterium longum subsp. infantis BIB1401242951 [CCWU]
118317
118391
+
Trp
CCA
[ENA]
¡û
>C11103168
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1693633
1693707
+
Trp
CCA
-
¡û
>C11103235
AP010889
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM [AP010889]
1693633
1693707
+
Trp
CCA
-
¡û
>C11103522
AP010890
Actinomycetota
Bifidobacterium longum subsp. infantis 157F [AP010890]
1034302
1034228
-
Trp
CCA
[Ensembl]
¡û
>W1610027523
AVQD01000003
Actinomycetota
Bifidobacterium breve MCC 1128 [AVQD]
254019
253945
-
Trp
CCA
[ENA]
¡û
>W1610074919
BCXO01000038
Actinomycetota
Bifidobacterium breve [BCXO]
144978
145052
+
Trp
CCA
[ENA]
¡û
>W1610518922
JDTT01000047
Actinomycetota
Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM DSM 20088 [JDTT]
23715
23641
-
Trp
CCA
[ENA]
¡û
>W1710023757
AVQD01000003
Actinomycetota
Bifidobacterium breve MCC 1128 [AVQD]
254019
253945
-
Trp
CCA
[ENA]
¡û
>W1710072734
BCXO01000038
Actinomycetota
Bifidobacterium breve [BCXO]
144978
145052
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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