This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.65349 (46 seq.)
>W1710870153
LMKH01000012
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
244672
244758
+
Tyr
GTA
[ENA]
¡û
>W1710870877
LMKW01000008
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
448378
448464
+
Tyr
GTA
[ENA]
¡û
>W1710872319
LMLW01000011
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
230846
230932
+
Tyr
GTA
[ENA]
¡û
>W1710876753
LMPM01000002
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
432841
432755
-
Tyr
GTA
[ENA]
¡û
>W1710877236
LMPX01000004
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
115104
115018
-
Tyr
GTA
[ENA]
¡û
>W1711603465
MOLY01000045
Alphaproteobacteria
Sphingomonas montana W16RD [MOLY]
275910
275824
-
Tyr
GTA
[ENA]
¡û
>WENV170559769
CXWL01148200
[CXWL] groundwater metagenome; biofilm material
428
514
+
Tyr
GTA
[ENA]
¡û
>WENV170577512
FSSH01000103
[FSSH] freshwater metagenome; drinking water
87709
87795
+
Tyr
GTA
[ENA]
¡û
>C191154735
CP037913
Alphaproteobacteria
Sphingomonas sp. AAP5 [CP037913]
523039
523125
+
Tyr
GTA
-
¡û
>C191163777
CP039249
Alphaproteobacteria
Sphingomonas sp. PAMC26645 [CP039249]
1185872
1185786
-
Tyr
GTA
-
¡û
>W1810475074
QAIS01000615
Alphaproteobacteria
Sphingomonas sp. HMWF008 [QAIS]
5523
5609
+
Tyr
GTA
[ENA]
¡û
>W1810476725
QAOF01000007
Alphaproteobacteria
Sphingomonas sp. PP-CE-3G-477 [QAOF]
171503
171589
+
Tyr
GTA
[ENA]
¡û
>W1810486882
QAYE01000001
Alphaproteobacteria
Sphingomonas faeni MA-olki [QAYE]
301420
301334
-
Tyr
GTA
[ENA]
¡û
>SRA1014381
SRR023845.114980
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
173
87
-
Tyr
GTA
[SRA]
>SRA1014855
SRR023845.346116
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
166
252
+
Tyr
GTA
[SRA]
>SRA1015206
SRR023845.498428
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
100
186
+
Tyr
GTA
[SRA]
>W2010674402
JACCFG010000002
Alphaproteobacteria
Sphingomonas sp. R-74633 [JACCFG]
311306
311220
-
Tyr
GTA
[ENA]
¡û
>W2010732170
JACIJR010000001
Alphaproteobacteria
Sphingomonas prati DSM 103336 [JACIJR]
446532
446446
-
Tyr
GTA
[ENA]
¡û
>W2011354875
RAPZ01000010
Alphaproteobacteria
Sphingomonas sp. PP-CC-1A-547 [RAPZ]
907915
908001
+
Tyr
GTA
[ENA]
¡û
>W2011404468
RCWT01000011
Alphaproteobacteria
Sphingomonas sp. PP-F2F-G114-C0414 [RCWT]
236223
236309
+
Tyr
GTA
[ENA]
¡û
>W2011404797
RCWY01000003
Alphaproteobacteria
Sphingomonas sp. PP-CE-3A-406 [RCWY]
755792
755706
-
Tyr
GTA
[ENA]
¡û
>W2011407563
RCZC01000006
Alphaproteobacteria
Sphingomonas glacialis E6.1 [RCZC]
52509
52423
-
Tyr
GTA
[ENA]
¡û
>W2011536261
SCIN01000002
Alphaproteobacteria
Sphingomonas sp. UV9 [SCIN]
390642
390556
-
Tyr
GTA
[ENA]
¡û
>W2011619343
SLUY01000001
Alphaproteobacteria
Sphingomonas sp. PP-CC-3G-468 [SLUY]
908105
908191
+
Tyr
GTA
[ENA]
¡û
>W2011623827
SLXW01000001
Alphaproteobacteria
Sphingomonas sp. PP-CE-1G-424 [SLXW]
406759
406845
+
Tyr
GTA
[ENA]
¡û
>W2011624056
SLYA01000001
Alphaproteobacteria
Sphingomonas sp. PP-CE-1A-559 [SLYA]
178209
178123
-
Tyr
GTA
[ENA]
¡û
>W2011624171
SLYD01000002
Alphaproteobacteria
Sphingomonas sp. PP-F2F-A104-K0414 [SLYD]
487838
487924
+
Tyr
GTA
[ENA]
¡û
>W2011624258
SLYF01000001
Alphaproteobacteria
Sphingomonas sp. PP-CC-3A-396 [SLYF]
466890
466976
+
Tyr
GTA
[ENA]
¡û
>W2012106791
VOQR01000001
Alphaproteobacteria
Sphingomonas ginsenosidivorax KHI67 [VOQR]
2753427
2753341
-
Tyr
GTA
[ENA]
¡û
>W2012425953
WRPJ01000001
Alphaproteobacteria
Sphingomonas prati W18RD [WRPJ]
490295
490381
+
Tyr
GTA
[ENA]
¡û
>W2110020657
BMDW01000001
Alphaproteobacteria
Sphingomonas psychrolutea CGMCC 1.10106 [BMDW]
309322
309236
-
Tyr
GTA
[ENA]
¡û
>W2110027958
BMJP01000001
Alphaproteobacteria
Sphingomonas prati CGMCC 1.15645 [BMJP]
1479922
1479836
-
Tyr
GTA
[ENA]
¡û
>W2110051932
BNAQ01000002
Alphaproteobacteria
Sphingomonas glacialis CGMCC 1.8957 [BNAQ]
40676
40590
-
Tyr
GTA
[ENA]
¡û
>W2110243524
JACONT010000035
Alphaproteobacteria
Sphingomonas albertensis DOAB 1063 [JACONT]
16728
16814
+
Tyr
GTA
[ENA]
¡û
>W2110291005
JACYUS010000001
Alphaproteobacteria
Sphingomonas sp. CFBP 13728 CFBP13728 [JACYUS]
1673328
1673414
+
Tyr
GTA
[ENA]
¡û
>C211397923
CP082839
Alphaproteobacteria
Sphingomonas sp. AK-PDB1-5 [CP082839]
3925420
3925506
+
Tyr
GTA
-
¡û
>C241006589
AP022672
Alphaproteobacteria
Sphingomonas sp. HMP6 [AP022672]
2065991
2065905
-
Tyr
GTA
-
¡û
>C241006619
AP022673
Alphaproteobacteria
Sphingomonas sp. HMP9 [AP022673]
2109787
2109873
+
Tyr
GTA
-
¡û
>W2130019076
JADBIA010000003
Alphaproteobacteria
Sphingomonas sp. CFBP 13603 CFBP13603 [JADBIA]
99834
99920
+
Tyr
GTA
[ENA]
¡û
>W121033303
AHIS01000105
Alphaproteobacteria
Sphingomonas sp. PAMC 26605 [AHIS]
12810
12724
-
Tyr
GTA
[ENA]
¡û
>W1610732499
LMKH01000012
Alphaproteobacteria
Sphingomonas sp. Leaf208 [LMKH]
244672
244758
+
Tyr
GTA
[ENA]
¡û
>W1610733223
LMKW01000008
Alphaproteobacteria
Sphingomonas sp. Leaf230 [LMKW]
448378
448464
+
Tyr
GTA
[ENA]
¡û
>W1610734665
LMLW01000011
Alphaproteobacteria
Sphingomonas sp. Leaf242 [LMLW]
230846
230932
+
Tyr
GTA
[ENA]
¡û
>W1610739099
LMPM01000002
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
432841
432755
-
Tyr
GTA
[ENA]
¡û
>W1610739582
LMPX01000004
Alphaproteobacteria
Sphingomonas sp. Leaf198 [LMPX]
115104
115018
-
Tyr
GTA
[ENA]
¡û
>W1710571517
FOVZ01000002
Alphaproteobacteria
Sphingomonas sp. OK281 [FOVZ]
713058
712972
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK