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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.65352 (47 seq.)
>W1711386905
MEFY01000002
Actinomycetota
Leifsonia sp. SCN 70-46 [MEFY]
654326
654240
-
Leu
CAG
[ENA]
¡û
>W1711505560
MKVP01000001
Actinomycetota
Micrococcales bacterium 70-64 [MKVP]
1247176
1247090
-
Leu
CAG
[ENA]
¡û
>WENV180016647
FSVR01000075
[FSVR] metagenome; soil
4258
4342
+
Leu
CAG
[ENA]
¡û
>WENV180016655
FSVR01000263
[FSVR] metagenome; soil
4184
4100
-
Leu
CAG
[ENA]
¡û
>WENV180017013
FSWJ01000454
[FSWJ] metagenome; soil
3061
3147
+
Leu
CAG
[ENA]
¡û
>WENV180017282
FSWR01000053
[FSWR] metagenome; soil
21623
21537
-
Leu
CAG
[ENA]
¡û
>WENV180023846
FTIF01001663
[FTIF] metagenome; soil
11321
11235
-
Leu
CAG
[ENA]
¡û
>WENV180024063
FTIF01019789
[FTIF] metagenome; soil
506
420
-
Leu
CAG
[ENA]
¡û
>WENV180026447
FTIT01256602
[FTIT] metagenome; soil
648
732
+
Leu
CAG
[ENA]
¡û
>WENV180028925
FTJH01470367
[FTJH] metagenome; soil
164
80
-
Leu
CAG
[ENA]
¡û
>WENV180029342
FTJI01803513
[FTJI] metagenome; soil
1349
1435
+
Leu
CAG
[ENA]
¡û
>WENV180030832
FTJN01144014
[FTJN] metagenome; soil
2061
2147
+
Leu
CAG
[ENA]
¡û
>WENV180034080
FTKM01588429
[FTKM] metagenome; soil
121
36
-
Leu
CAG
[ENA]
¡û
>WENV180034867
FTKR01820559
[FTKR] metagenome; soil
1349
1435
+
Leu
CAG
[ENA]
¡û
>WENV180304347
OBJI01007105
[OBJI] soil metagenome; soil
555
641
+
Leu
CAG
[ENA]
¡û
>WENV181222641
OFDC01000041
[OFDC] hot springs metagenome; Water
136465
136550
+
Leu
CAG
[ENA]
¡û
>W141279347
JAGG01000001
Actinomycetota
Microbacterium sp. KROCY2 [JAGG]
377231
377317
+
Leu
CAG
[ENA]
¡û
>WENV170700516
LIDZ01014954
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
11327
11241
-
Leu
CAG
[ENA]
¡û
>W141531748
JHEL01000013
Actinomycetota
Curtobacterium sp. S6 [JHEL]
15674
15588
-
Leu
CAG
[ENA]
¡û
>W1911497896
OCST01000005
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.05381 [OCST]
108941
109026
+
Leu
CAG
[ENA]
¡û
>W1810364710
PVTL01000005
Actinomycetota
Glaciihabitans tibetensis CGMCC 1.12484 [PVTL]
122121
122036
-
Leu
CAG
[ENA]
¡û
>W1810476273
QANL01000001
Actinomycetota
Planctomonas deserti 13S1-3 [QANL]
918563
918649
+
Leu
CAG
[ENA]
¡û
>C151095278
CP012507
Actinomycetota
Kocuria palustris MU14/1 [CP012507]
252765
252679
-
Leu
CAG
-
¡û
>W2010471660
JAAGWZ010000003
Actinomycetota
Galbitalea soli NBRC 108727 [JAAGWZ]
215
130
-
Leu
CAG
[ENA]
¡û
>W2010498960
JAALGE010000014
Actinomycetota
Marisediminicola sp. SM7 A14 [JAALGE]
920
836
-
Leu
CAG
[ENA]
¡û
>W2010526970
JAANZA010000001
Actinomycetota
Cryobacterium sp. BB307 [JAANZA]
549962
550048
+
Leu
CAG
[ENA]
¡û
>W2010672229
JACCCH010000001
Actinomycetota
Leifsonia sp. AK011 [JACCCH]
436225
436140
-
Leu
CAG
[ENA]
¡û
>W2010674719
JACCFN010000001
Actinomycetota
Galbitalea soli DSM 105515 [JACCFN]
210123
210208
+
Leu
CAG
[ENA]
¡û
>W2011158800
OCST01000005
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.05381 [OCST]
108941
109026
+
Leu
CAG
[ENA]
¡û
>W2011375953
RBLM01000010
Actinomycetota
Kocuria sp. HSID16901 [RBLM]
3174
3088
-
Leu
CAG
[ENA]
¡û
>W2011604787
SJEV01000001
Actinomycetota
Microbacteriaceae bacterium J5903 [SJEV]
1221353
1221267
-
Leu
CAG
[ENA]
¡û
>W2011987300
VDOR01000024
Actinomycetota
Kocuria palustris DE0549 [VDOR]
246
160
-
Leu
CAG
[ENA]
¡û
>W2012020483
VFOM01000006
Actinomycetota
Homoserinimonas aerilata DSM 26477 [VFOM]
8188
8274
+
Leu
CAG
[ENA]
¡û
>W2012125092
VRMG01000009
Actinomycetota
Glaciihabitans sp. CHu50b-6-2 [VRMG]
156477
156561
+
Leu
CAG
[ENA]
¡û
>W2012327642
WHMT01000002
Actinomycetota
Pseudactinotalea sp. HY160 [WHMT]
309095
309011
-
Leu
CAG
[ENA]
¡û
>W2110029930
BMLC01000004
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.5381 [BMLC]
108909
108994
+
Leu
CAG
[ENA]
¡û
>W2110161139
JAAVUZ010000020
Actinomycetota
Glaciihabitans sp. dw_435 [JAAVUZ]
31395
31480
+
Leu
CAG
[ENA]
¡û
>W2110195932
JABXWQ010000001
Actinomycetota
Cryobacterium sp. BB736 [JABXWQ]
904001
904087
+
Leu
CAG
[ENA]
¡û
>W2110363688
JADOVH010000005
Actinomycetota
Frigoribacterium sp. CG_9.8 [JADOVH]
157031
157115
+
Leu
CAG
[ENA]
¡û
>W2110477446
JAFDPI010000014
Actinomycetota
Kocuria palustris F5_7S_P2A [JAFDPI]
23045
23129
+
Leu
CAG
[ENA]
¡û
>W2110477495
JAFDPJ010000013
Actinomycetota
Kocuria palustris F5_7S_P2B [JAFDPJ]
23045
23129
+
Leu
CAG
[ENA]
¡û
>W2110477729
JAFDPS010000020
Actinomycetota
Kocuria palustris F5_7S_P8 [JAFDPS]
23773
23857
+
Leu
CAG
[ENA]
¡û
>W2110478245
JAFDQD010000014
Actinomycetota
Kocuria palustris F6_7S_B_1 [JAFDQD]
34983
34899
-
Leu
CAG
[ENA]
¡û
>C211060560
CP043653
Actinomycetota
Glaciihabitans sp. INWT7 [CP043653]
24415
24499
+
Leu
CAG
-
¡û
>C231201749
CP085036
Actinomycetota
Microbacteriaceae bacterium SG_E_30_P1 [CP085036]
1517030
1517116
+
Leu
CAG
-
¡û
>C241017623
CP017146
Actinomycetota
Marisediminicola antarctica ZS314 [CP017146]
384297
384211
-
Leu
CAG
-
¡û
>C241103525
CP045920
Actinomycetota
Pseudactinotalea sp. HY158 [CP045920]
81386
81470
+
Leu
CAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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