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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653536 (44 seq.)
>W1711050778
LRRR01000001
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
498618
498692
+
Gln
TTG
[ENA]
¡û
>W1711050779
LRRR01000001
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
498821
498895
+
Gln
TTG
[ENA]
¡û
>W1711229272
LXYH01000005
Alphaproteobacteria
Rhodobacteraceae bacterium EhC02 [LXYH]
131840
131766
-
Gln
TTG
[ENA]
¡û
>W131216075
ATVN01000015
Alphaproteobacteria
Pseudorhodobacter ferrugineus DSM 5888 [ATVN]
29863
29789
-
Gln
TTG
[ENA]
¡û
>W1711385833
MEES01000020
Alphaproteobacteria
Paracoccus sp. SCN 68-21 [MEES]
39552
39626
+
Gln
TTG
[ENA]
¡û
>W1711456274
MJAP01000001
Alphaproteobacteria
Natronohydrobacter thiooxidans [MJAP]
25721
25647
-
Gln
TTG
[ENA]
¡û
>C171110756
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
196919
196993
+
Gln
TTG
-
¡û
>WENV180013920
FPIC01010466
[FPIC] soil metagenome; Soil
2021
1947
-
Gln
TTG
[ENA]
¢þ
>WENV180298767
OBJA01591908
[OBJA] soil metagenome; sediment, water from around vicinity
87
13
-
Gln
TTG
[ENA]
¢þ
>C181117172
CP025430
Alphaproteobacteria
Paracoccus zhejiangensis J6 [CP025430]
1671532
1671606
+
Gln
TTG
-
¡û
>C181194175
CP030918
Alphaproteobacteria
Paracoccus suum SC2-6 [CP030918]
2692231
2692305
+
Gln
TTG
-
¡û
>C191131971
CP034810
Alphaproteobacteria
Paracoccus sp. Arc7-R13 [CP034810]
2440956
2441030
+
Gln
TTG
-
¡û
>C191159601
CP038439
Alphaproteobacteria
Paracoccus liaowanqingii 2251 [CP038439]
890213
890139
-
Gln
TTG
-
¡û
>C191173502
CP039964
Alphaproteobacteria
Pseudorhodobacter turbinis S12M18 [CP039964]
679541
679467
-
Gln
TTG
-
¡û
>C141006325
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
1386990
1387064
+
Gln
TTG
[Ensembl]
¡û
>C141006352
CP006650
Alphaproteobacteria
Paracoccus aminophilus JCM 7686 [CP006650]
1483067
1482993
-
Gln
TTG
[Ensembl]
¡û
>W1910547067
FZNM01000004
Alphaproteobacteria
Paracoccus sediminis DSM 26170 [FZNM]
28901
28975
+
Gln
TTG
[ENA]
¡û
>W1911245311
NSJZ01000001
Alphaproteobacteria
Paracoccus salipaludis WN007 [NSJZ]
429294
429220
-
Gln
TTG
[ENA]
¡û
>W1911397921
NWMQ01000012
Alphaproteobacteria
Paracoccus sp. SY [NWMQ]
15933
15859
-
Gln
TTG
[ENA]
¡û
>W1911813226
QZEV01000174
Alphaproteobacteria
Paracoccus aestuarii DSM 19484 [QZEV]
324
250
-
Gln
TTG
[ENA]
¡û
>W1810426252
PYWA01000003
Alphaproteobacteria
Paracoccus indicus IO390502 [PYWA]
74728
74654
-
Gln
TTG
[ENA]
¡û
>W1810583970
QEYD01000003
Alphaproteobacteria
Pararhodobacter marinus CIC4N-9 [QEYD]
120230
120304
+
Gln
TTG
[ENA]
¡û
>W1810667425
QJPK01000006
Alphaproteobacteria
Paracoccus sediminilitoris DSL-16 [QJPK]
195686
195760
+
Gln
TTG
[ENA]
¡û
>W1810684474
QKYL01000001
Alphaproteobacteria
Paracoccus saliphilus CCTCC AB 2016131 [QKYL]
128630
128556
-
Gln
TTG
[ENA]
¡û
>W1810697123
QLUV01000007
Alphaproteobacteria
Paracoccus endophyticus SYSUP0003 [QLUV]
137868
137942
+
Gln
TTG
[ENA]
¡û
>W1510013678
BBPH01000094
Alphaproteobacteria
Paracoccus sp. PAMC 22219 [BBPH]
34836
34910
+
Gln
TTG
[ENA]
¡û
>W1511348640
JRKP01000010
Alphaproteobacteria
Paracoccus sanguinis 39524 [JRKP]
39188
39114
-
Gln
TTG
[ENA]
¡û
>W1511348677
JRKQ01000008
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
49497
49423
-
Gln
TTG
[ENA]
¡û
>W1511348729
JRKR01000016
Alphaproteobacteria
Paracoccus sanguinis 10990 [JRKR]
36791
36717
-
Gln
TTG
[ENA]
¡û
>W1511348794
JRKS01000054
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
19734
19660
-
Gln
TTG
[ENA]
¡û
>W1511348835
JRKT01000045
Alphaproteobacteria
Paracoccus sanguinis 4681 [JRKT]
15320
15246
-
Gln
TTG
[ENA]
¡û
>W1511518700
JXYF01000024
Alphaproteobacteria
Paracoccus sp. S4493 [JXYF]
39695
39621
-
Gln
TTG
[ENA]
¡û
>W1511526785
JYGY01000001
Alphaproteobacteria
Paracoccus sp. 228 361 [JYGY]
279336
279262
-
Gln
TTG
[ENA]
¡û
>W1511698391
LGHS01000076
Alphaproteobacteria
Pseudorhodobacter aquimaris KCTC 23043 [LGHS]
372637
372711
+
Gln
TTG
[ENA]
¡û
>W1511698502
LGHV01000038
Alphaproteobacteria
Pseudorhodobacter ferrugineus LMG 22047 [LGHV]
28496
28422
-
Gln
TTG
[ENA]
¡û
>W1610891907
LRRR01000001
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
498618
498692
+
Gln
TTG
[ENA]
¡û
>W1610891908
LRRR01000001
Alphaproteobacteria
Pararhodobacter sp. CCB-MM2 CCB-MM2 [LRRR]
498821
498895
+
Gln
TTG
[ENA]
¡û
>W1611013142
LXYH01000005
Alphaproteobacteria
Rhodobacteraceae bacterium EhC02 [LXYH]
131840
131766
-
Gln
TTG
[ENA]
¡û
>W1710508108
FMVT01000011
Alphaproteobacteria
Paracoccus tibetensis [FMVT]
7515
7441
-
Gln
TTG
[ENA]
¡û
>W1710518955
FNEJ01000003
Alphaproteobacteria
Salipiger marinus marina [FNEJ]
245761
245687
-
Gln
TTG
[ENA]
¡û
>W1710521194
FNGE01000025
Alphaproteobacteria
Paracoccus chinensis [FNGE]
24684
24758
+
Gln
TTG
[ENA]
¡û
>W1710528228
FNNA01000006
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
83188
83262
+
Gln
TTG
[ENA]
¡û
>W1710530096
FNOM01000009
Alphaproteobacteria
Roseicitreum antarcticum [FNOM]
200922
200848
-
Gln
TTG
[ENA]
¡û
>W1710626836
JPKW01000007
Alphaproteobacteria
Paracoccus sp. SM22M-07 [JPKW]
98070
98144
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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