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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653699 (35 seq.)
>W1711377903
MDZH01000173
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
37954
37883
-
Thr
TGT
[ENA]
¡û
>W131063358
ANKQ01000001
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
1256790
1256861
+
Thr
TGT
[ENA]
¡û
>W131087190
AOCI01000191
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
351
280
-
Thr
TGT
[ENA]
¡û
>W131203749
ASZQ01000001
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
58704
58775
+
Thr
TGT
[ENA]
¡û
>W1711603048
MOLN01000387
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
442
371
-
Thr
TGT
[ENA]
¡û
>W1711772022
MVGR01000004
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
881613
881687
+
Thr
TGT
[ENA]
¡û
>C171016623
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
167199
167270
+
Thr
TGT
-
¡û
>C171112062
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
2726337
2726408
+
Thr
TGT
-
¡û
>WENV180111778
OAPN01174108
[OAPN] marine metagenome; 2011
7
78
+
Thr
TGT
[ENA]
¢þ
>W141065586
AQPY01001037
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
121
192
+
Thr
TGT
[ENA]
¡û
>W141242419
CAII01000546
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
3790
3864
+
Thr
TGT
[ENA]
¡û
>W141242441
CAIJ01000106
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
2061
1990
-
Thr
TGT
[ENA]
¡û
>W141242548
CAIL01000298
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
8821
8895
+
Thr
TGT
[ENA]
¡û
>W141242577
CAIM01000522
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
2156
2082
-
Thr
TGT
[ENA]
¡û
>W141242626
CAIO01000013
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
3313
3384
+
Thr
TGT
[ENA]
¡û
>W141242667
CAIP01000021
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
26863
26934
+
Thr
TGT
[ENA]
¡û
>W141242714
CAIQ01000093
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
4945
4874
-
Thr
TGT
[ENA]
¡û
>C08006372
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
2461927
2461856
-
Thr
TGT
[Ensembl]
¡û
>WENV182865736
OKRQ01000993
[OKRQ] freshwater metagenome; freshwater
2237
2308
+
Thr
TGT
[ENA]
¢þ
>WENV170680586
LFEF01000589
[LFEF] freshwater metagenome; waterbloom
9401
9472
+
Thr
TGT
[ENA]
¢þ
>C181046179
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
4007400
4007329
-
Thr
TGT
-
¡û
>C191007285
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
407687
407616
-
Thr
TGT
-
¡û
>W1910020337
BDSG01000004
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
62464
62393
-
Thr
TGT
[ENA]
¡û
>W1910020404
BDSM01000046
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
151603
151674
+
Thr
TGT
[ENA]
¡û
>W1910038665
BEIU01000011
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
47931
48002
+
Thr
TGT
[ENA]
¡û
>W1910038709
BEIV01000052
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
15805
15734
-
Thr
TGT
[ENA]
¡û
>W1910067373
BEYQ01000015
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
48075
48146
+
Thr
TGT
[ENA]
¡û
>W1910067410
BFAC01000011
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
59250
59321
+
Thr
TGT
[ENA]
¡û
>W1910142340
BIFY01000074
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
24146
24075
-
Thr
TGT
[ENA]
¡û
>W1910768695
MOLZ01000252
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
3255
3326
+
Thr
TGT
[ENA]
¡û
>C151079354
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
169809
169880
+
Thr
TGT
[Ensembl]
¡û
>C151080702
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
4242358
4242432
+
Thr
TGT
-
¡û
>W1510013625
BBPA01000031
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
15246
15317
+
Thr
TGT
[ENA]
¡û
>W1610550838
JXYX01000015
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
95541
95470
-
Thr
TGT
[ENA]
¡û
>W1710660715
JXYX01000015
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
95541
95470
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK