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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653700 (38 seq.)
>W1711377913
MDZH01000364
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
31196
31125
-
Gly
CCC
[ENA]
¡û
>W131063376
ANKQ01000002
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
802203
802274
+
Gly
CCC
[ENA]
¡û
>W131087158
AOCI01000007
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
54479
54550
+
Gly
CCC
[ENA]
¡û
>W131203771
ASZQ01000231
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
49686
49615
-
Gly
CCC
[ENA]
¡û
>W1711603021
MOLN01000020
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
40651
40580
-
Gly
CCC
[ENA]
¡û
>W1711772033
MVGR01000004
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
917669
917598
-
Gly
CCC
[ENA]
¡û
>C171016625
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
400281
400352
+
Gly
CCC
-
¡û
>C171112069
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
4697971
4698042
+
Gly
CCC
-
¡û
>WENV180110664
OAPN01002910
[OAPN] marine metagenome; 2011
889
960
+
Gly
CCC
[ENA]
¢þ
>W141065576
AQPY01000777
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
233
162
-
Gly
CCC
[ENA]
¡û
>W141242379
CAIH01000255
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
213
142
-
Gly
CCC
[ENA]
¡û
>W141242422
CAII01000643
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
10684
10613
-
Gly
CCC
[ENA]
¡û
>W141242440
CAIJ01000094
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
8143
8214
+
Gly
CCC
[ENA]
¡û
>W141242502
CAIK01000390
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
8719
8790
+
Gly
CCC
[ENA]
¡û
>W141242546
CAIL01000290
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
1074
1145
+
Gly
CCC
[ENA]
¡û
>W141242576
CAIM01000521
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
3298
3227
-
Gly
CCC
[ENA]
¡û
>W141242596
CAIN01000094
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
8910
8981
+
Gly
CCC
[ENA]
¡û
>W141242659
CAIO01000460
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
2454
2525
+
Gly
CCC
[ENA]
¡û
>W141242695
CAIP01000410
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
4998
4927
-
Gly
CCC
[ENA]
¡û
>W141242704
CAIQ01000009
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
24699
24770
+
Gly
CCC
[ENA]
¡û
>C08006373
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
2453602
2453531
-
Gly
CCC
[Ensembl]
¡û
>WENV170681042
LFEF01046022
[LFEF] freshwater metagenome; waterbloom
6384
6455
+
Gly
CCC
[ENA]
¢þ
>C181046169
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
3199644
3199715
+
Gly
CCC
-
¡û
>C191007286
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
400508
400437
-
Gly
CCC
-
¡û
>W1910020359
BDSG01000066
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
6857
6786
-
Gly
CCC
[ENA]
¡û
>W1910020405
BDSM01000046
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
251143
251072
-
Gly
CCC
[ENA]
¡û
>W1910038670
BEIU01000015
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
68016
68087
+
Gly
CCC
[ENA]
¡û
>W1910038680
BEIV01000001
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
32023
32094
+
Gly
CCC
[ENA]
¡û
>W1910067360
BEYQ01000006
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
79181
79110
-
Gly
CCC
[ENA]
¡û
>W1910067389
BFAC01000001
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
771
700
-
Gly
CCC
[ENA]
¡û
>W1910142323
BIFY01000016
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
50095
50166
+
Gly
CCC
[ENA]
¡û
>W1910665563
MCIH01000035
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
16337
16266
-
Gly
CCC
[ENA]
¡û
>W1910768691
MOLZ01000225
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
3649
3720
+
Gly
CCC
[ENA]
¡û
>C151079356
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
401535
401606
+
Gly
CCC
[Ensembl]
¡û
>C151080712
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
4257405
4257334
-
Gly
CCC
-
¡û
>W1510013628
BBPA01000039
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
87073
87002
-
Gly
CCC
[ENA]
¡û
>W1610550837
JXYX01000015
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
64050
64121
+
Gly
CCC
[ENA]
¡û
>W1710660714
JXYX01000015
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
64050
64121
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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