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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653701 (43 seq.)
>W131063390
ANKQ01000002
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
20404
20331
-
Asn
GTT
[ENA]
¡û
>W131087180
AOCI01000144
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
27427
27500
+
Asn
GTT
[ENA]
¡û
>W131203779
ASZQ01000256
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
26638
26711
+
Asn
GTT
[ENA]
¡û
>W1711377891
MDZH01000129
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
20309
20236
-
Asn
GTT
[ENA]
¡û
>W1711603034
MOLN01000086
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
3185
3258
+
Asn
GTT
[ENA]
¡û
>W1711772026
MVGR01000004
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
1748794
1748867
+
Asn
GTT
[ENA]
¡û
>C171016630
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
1584526
1584599
+
Asn
GTT
-
¡û
>C171112089
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
233453
233380
-
Asn
GTT
-
¡û
>W141038591
ALVZ01000142
Cyanobacteriota
Xenococcus sp. PCC 7305 [ALVZ]
8225
8154
-
Asn
GTT
[ENA]
¡û
>W141065587
AQPY01001224
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
693
766
+
Asn
GTT
[ENA]
¡û
>W141242386
CAIH01000311
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
13577
13650
+
Asn
GTT
[ENA]
¡û
>W141242429
CAII01000779
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
2098
2171
+
Asn
GTT
[ENA]
¡û
>W141242450
CAIJ01000280
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
3239
3166
-
Asn
GTT
[ENA]
¡û
>W141242493
CAIK01000228
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
22208
22281
+
Asn
GTT
[ENA]
¡û
>W141242531
CAIL01000164
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
47813
47740
-
Asn
GTT
[ENA]
¡û
>W141242573
CAIM01000493
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
6580
6507
-
Asn
GTT
[ENA]
¡û
>W141242617
CAIN01000425
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
3080
3153
+
Asn
GTT
[ENA]
¡û
>W141242654
CAIO01000392
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
14305
14232
-
Asn
GTT
[ENA]
¡û
>W141242677
CAIP01000114
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
6314
6241
-
Asn
GTT
[ENA]
¡û
>W141242741
CAIQ01000544
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
2904
2831
-
Asn
GTT
[ENA]
¡û
>C08006377
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
1864607
1864534
-
Asn
GTT
[Ensembl]
¡û
>WENV170680595
LFEF01001757
[LFEF] freshwater metagenome; waterbloom
5152
5079
-
Asn
GTT
[ENA]
¢þ
>C181046177
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
4586960
4586887
-
Asn
GTT
-
¡û
>C191007264
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
5692391
5692318
-
Asn
GTT
-
¡û
>W1910020356
BDSG01000057
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
28893
28820
-
Asn
GTT
[ENA]
¡û
>W1910020402
BDSM01000043
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
11697
11624
-
Asn
GTT
[ENA]
¡û
>W1910038648
BEIU01000001
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
207131
207058
-
Asn
GTT
[ENA]
¡û
>W1910038681
BEIV01000002
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
963
1036
+
Asn
GTT
[ENA]
¡û
>W1910067355
BEYQ01000004
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
82840
82767
-
Asn
GTT
[ENA]
¡û
>W1910067401
BFAC01000007
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
48739
48812
+
Asn
GTT
[ENA]
¡û
>W1910142342
BIFY01000083
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
2904
2831
-
Asn
GTT
[ENA]
¡û
>W1910665568
MCIH01000055
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
29420
29347
-
Asn
GTT
[ENA]
¡û
>W1910768679
MOLZ01000094
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
13489
13416
-
Asn
GTT
[ENA]
¡û
>W1911638998
PXOH01000011
Cyanobacteriota
Aphanothece hegewaldii CCALA 016 [PXOH]
60933
60860
-
Asn
GTT
[ENA]
¡û
>C151079361
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
1589972
1590045
+
Asn
GTT
[Ensembl]
¡û
>C151080721
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
2564474
2564401
-
Asn
GTT
-
¡û
>W1510013623
BBPA01000025
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
27101
27028
-
Asn
GTT
[ENA]
¡û
>W1610550816
JXYX01000002
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
25690
25617
-
Asn
GTT
[ENA]
¡û
>W1710004729
AJHB01000615
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
119
46
-
Asn
GTT
[ENA]
¡û
>W1710005078
AJUS01000669
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
118
45
-
Asn
GTT
[ENA]
¡û
>W1710005114
AJUT01000619
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
133
60
-
Asn
GTT
[ENA]
¡û
>W1710005151
AJUU01000621
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
144
71
-
Asn
GTT
[ENA]
¡û
>W1710660693
JXYX01000002
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
25690
25617
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK