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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653702 (40 seq.)
>W1711377919
MDZH01000460
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
1267
1196
-
Thr
CGT
[ENA]
¡û
>W131063378
ANKQ01000002
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
1424546
1424617
+
Thr
CGT
[ENA]
¡û
>W131087159
AOCI01000011
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
24531
24602
+
Thr
CGT
[ENA]
¡û
>W131203757
ASZQ01000142
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
937
1008
+
Thr
CGT
[ENA]
¡û
>W1711603032
MOLN01000082
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
12705
12776
+
Thr
CGT
[ENA]
¡û
>W1711772041
MVGR01000005
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
867169
867240
+
Thr
CGT
[ENA]
¡û
>C171016638
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
3080216
3080287
+
Thr
CGT
-
¡û
>C171112076
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
3624314
3624243
-
Thr
CGT
-
¡û
>WENV180110840
OAPN01009676
[OAPN] marine metagenome; 2011
730
659
-
Thr
CGT
[ENA]
¢þ
>W141065562
AQPY01000375
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
411
340
-
Thr
CGT
[ENA]
¡û
>W141242391
CAIH01000414
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
950
879
-
Thr
CGT
[ENA]
¡û
>W141242403
CAII01000187
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
5236
5307
+
Thr
CGT
[ENA]
¡û
>W141242438
CAIJ01000087
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
12044
12115
+
Thr
CGT
[ENA]
¡û
>W141242486
CAIK01000135
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
3987
4058
+
Thr
CGT
[ENA]
¡û
>W141242543
CAIL01000270
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
993
922
-
Thr
CGT
[ENA]
¡û
>W141242560
CAIM01000228
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
18657
18586
-
Thr
CGT
[ENA]
¡û
>W141242618
CAIN01000427
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
12597
12668
+
Thr
CGT
[ENA]
¡û
>W141242653
CAIO01000385
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
1385
1314
-
Thr
CGT
[ENA]
¡û
>W141242673
CAIP01000090
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
5335
5406
+
Thr
CGT
[ENA]
¡û
>W141242735
CAIQ01000390
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
11081
11010
-
Thr
CGT
[ENA]
¡û
>C08006379
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
1809540
1809469
-
Thr
CGT
[Ensembl]
¡û
>WENV170680719
LFEF01014127
[LFEF] freshwater metagenome; waterbloom
51586
51515
-
Thr
CGT
[ENA]
¢þ
>C181046162
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
1233374
1233445
+
Thr
CGT
-
¡û
>C191007266
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
5638154
5638083
-
Thr
CGT
-
¡û
>W1910020345
BDSG01000032
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
5050
5121
+
Thr
CGT
[ENA]
¡û
>W1910020394
BDSM01000024
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
37995
37924
-
Thr
CGT
[ENA]
¡û
>W1910038660
BEIU01000008
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
109059
108988
-
Thr
CGT
[ENA]
¡û
>W1910038713
BEIV01000071
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
9487
9558
+
Thr
CGT
[ENA]
¡û
>W1910067367
BEYQ01000009
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
109292
109221
-
Thr
CGT
[ENA]
¡û
>W1910067408
BFAC01000010
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
174143
174072
-
Thr
CGT
[ENA]
¡û
>W1910142315
BIFY01000001
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
97413
97484
+
Thr
CGT
[ENA]
¡û
>W1910665586
MCIH01000215
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
12726
12655
-
Thr
CGT
[ENA]
¡û
>W1910768700
MOLZ01000322
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
1277
1348
+
Thr
CGT
[ENA]
¡û
>C151079369
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
3077238
3077309
+
Thr
CGT
[Ensembl]
¡û
>C151080713
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
3915093
3915022
-
Thr
CGT
-
¡û
>W1510013634
BBPA01000053
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
45379
45450
+
Thr
CGT
[ENA]
¡û
>W1710004728
AJHB01000594
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
108
37
-
Thr
CGT
[ENA]
¡û
>W1710005076
AJUS01000643
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
108
37
-
Thr
CGT
[ENA]
¡û
>W1710005112
AJUT01000602
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
108
37
-
Thr
CGT
[ENA]
¡û
>W1710005149
AJUU01000598
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
108
37
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK