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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653703 (50 seq.)
>W1711377906
MDZH01000195
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
30515
30586
+
Thr
GGT
[ENA]
¡û
>W131063373
ANKQ01000002
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
493761
493832
+
Thr
GGT
[ENA]
¡û
>W131087166
AOCI01000063
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
10660
10731
+
Thr
GGT
[ENA]
¡û
>W1711603016
MOLN01000013
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
18995
19066
+
Thr
GGT
[ENA]
¡û
>W1711772029
MVGR01000004
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
1833739
1833810
+
Thr
GGT
[ENA]
¡û
>W1711979757
NDGV01000025
Cyanobacteriota
cyanobacterium TDX16 [NDGV]
26083
26012
-
Thr
GGT
[ENA]
¡û
>C171016642
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
4096237
4096308
+
Thr
GGT
-
¡û
>C171112083
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
2476060
2475989
-
Thr
GGT
-
¡û
>W141065589
AQPY01001245
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
2190
2261
+
Thr
GGT
[ENA]
¡û
>W141242371
CAIH01000175
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
15194
15123
-
Thr
GGT
[ENA]
¡û
>W141242412
CAII01000397
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
12281
12210
-
Thr
GGT
[ENA]
¡û
>W141242437
CAIJ01000049
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
3289
3218
-
Thr
GGT
[ENA]
¡û
>W141242481
CAIK01000081
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
10606
10535
-
Thr
GGT
[ENA]
¡û
>W141242539
CAIL01000261
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
63842
63771
-
Thr
GGT
[ENA]
¡û
>W141242579
CAIM01000529
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
10979
10908
-
Thr
GGT
[ENA]
¡û
>W141242593
CAIN01000071
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
14556
14627
+
Thr
GGT
[ENA]
¡û
>W141242639
CAIO01000216
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
7225
7296
+
Thr
GGT
[ENA]
¡û
>W141242683
CAIP01000170
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
17066
17137
+
Thr
GGT
[ENA]
¡û
>W141242706
CAIQ01000025
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
12801
12872
+
Thr
GGT
[ENA]
¡û
>C08006351
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
3298459
3298530
+
Thr
GGT
[Ensembl]
¡û
>WENV183702666
PDVI01016276
[PDVI] alkali sediment metagenome; glacial lake sediment
93
164
+
Thr
GGT
[ENA]
¢þ
>WENV170680782
LFEF01022258
[LFEF] freshwater metagenome; waterbloom
58281
58352
+
Thr
GGT
[ENA]
¢þ
>C181046193
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
378511
378440
-
Thr
GGT
-
¡û
>C191007254
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
1207996
1208067
+
Thr
GGT
-
¡û
>W1910020344
BDSG01000027
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
7065
7136
+
Thr
GGT
[ENA]
¡û
>W1910020407
BDSM01000047
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
95213
95142
-
Thr
GGT
[ENA]
¡û
>W1910038644
BEIU01000001
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
592321
592392
+
Thr
GGT
[ENA]
¡û
>W1910038693
BEIV01000021
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
20930
20859
-
Thr
GGT
[ENA]
¡û
>W1910067351
BEYQ01000003
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
191865
191794
-
Thr
GGT
[ENA]
¡û
>W1910067382
BFAC01000001
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
574709
574780
+
Thr
GGT
[ENA]
¡û
>W1910142333
BIFY01000054
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
9009
9080
+
Thr
GGT
[ENA]
¡û
>W1910665562
MCIH01000025
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
24673
24602
-
Thr
GGT
[ENA]
¡û
>W1910768666
MOLZ01000018
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
29820
29891
+
Thr
GGT
[ENA]
¡û
>W1910976691
NKFP01000006
Cyanobacteriota
Leptolyngbya ohadii IS1 [NKFP]
2785977
2785906
-
Thr
GGT
[ENA]
¡û
>W1911638315
PVWL01000008
Cyanobacteriota
Cyanosarcina burmensis burmensis CCALA 770 [PVWL]
88798
88727
-
Thr
GGT
[ENA]
¡û
>W1911638354
PVWM01000005
Cyanobacteriota
Chroococcidiopsis cubana CCALA 043 [PVWM]
16949
16878
-
Thr
GGT
[ENA]
¡û
>W1911639008
PXOH01000023
Cyanobacteriota
Aphanothece hegewaldii CCALA 016 [PXOH]
9544
9615
+
Thr
GGT
[ENA]
¡û
>W1911641180
PYCI01000075
Cyanobacteriota
Chroococcidiopsis sp. CCALA 051 [PYCI]
16401
16330
-
Thr
GGT
[ENA]
¡û
>W1911741985
QVFW01000004
Cyanobacteriota
Scytonema millei VB511283 [QVFW]
252162
252091
-
Thr
GGT
[ENA]
¡û
>C151079373
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
4096518
4096589
+
Thr
GGT
[Ensembl]
¡û
>C151080700
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
4167421
4167492
+
Thr
GGT
-
¡û
>W1510013616
BBPA01000014
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
34307
34378
+
Thr
GGT
[ENA]
¡û
>W1511401798
JTJC01000086
Cyanobacteriota
Scytonema millei VB511283 [JTJC]
3656528
3656599
+
Thr
GGT
[ENA]
¡û
>C161002788
AP017367
Cyanobacteriota
Leptolyngbya sp. O-77 [AP017367]
4853602
4853531
-
Thr
GGT
[Ensembl]
¡û
>C131004516
CP003597
Cyanobacteriota
Chroococcidiopsis thermalis PCC 7203 [CP003597]
3972971
3973042
+
Thr
GGT
[Ensembl]
¡û
>W1610550823
JXYX01000004
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
289030
288959
-
Thr
GGT
[ENA]
¡û
>W1710004740
AJHB01001073
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
965
1036
+
Thr
GGT
[ENA]
¡û
>W1710005126
AJUT01001070
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
953
1024
+
Thr
GGT
[ENA]
¡û
>W1710005162
AJUU01001055
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
952
1023
+
Thr
GGT
[ENA]
¡û
>W1710660700
JXYX01000004
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
289030
288959
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK