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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653705 (42 seq.)
>W1711377883
MDZH01000054
Cyanobacteriota
Microcystis aeruginosa NIES-98 [MDZH]
73740
73669
-
Val
TAC
[ENA]
¡û
>W131063356
ANKQ01000001
Cyanobacteriota
Microcystis aeruginosa TAIHU98 [ANKQ]
773556
773627
+
Val
TAC
[ENA]
¡û
>W131087186
AOCI01000168
Cyanobacteriota
Microcystis aeruginosa DIANCHI905 [AOCI]
33345
33416
+
Val
TAC
[ENA]
¡û
>W131203755
ASZQ01000133
Cyanobacteriota
Microcystis aeruginosa SPC 777 [ASZQ]
5165
5236
+
Val
TAC
[ENA]
¡û
>W1711603028
MOLN01000050
Cyanobacteriota
Microcystis aeruginosa NaRes975 [MOLN]
8967
9038
+
Val
TAC
[ENA]
¡û
>W1711772009
MVGR01000001
Cyanobacteriota
Microcystis aeruginosa KW [MVGR]
420424
420353
-
Val
TAC
[ENA]
¡û
>C171016648
CP012375
Cyanobacteriota
Microcystis aeruginosa NIES-2481 [CP012375]
2628463
2628392
-
Val
TAC
-
¡û
>C171112086
CP020771
Cyanobacteriota
Microcystis aeruginosa PCC 7806SL [CP020771]
999652
999581
-
Val
TAC
-
¡û
>WENV180111056
OAPN01024890
[OAPN] marine metagenome; 2011
204
133
-
Val
TAC
[ENA]
¢þ
>W141065555
AQPY01000162
Cyanobacteriota
Microcystis aeruginosa PCC 7005 [AQPY]
2271
2342
+
Val
TAC
[ENA]
¡û
>W141242362
CAIH01000076
Cyanobacteriota
Microcystis aeruginosa PCC 9432 [CAIH]
17290
17361
+
Val
TAC
[ENA]
¡û
>W141242421
CAII01000604
Cyanobacteriota
Microcystis aeruginosa PCC 9717 [CAII]
4958
4887
-
Val
TAC
[ENA]
¡û
>W141242462
CAIJ01000513
Cyanobacteriota
Microcystis aeruginosa PCC 9443 [CAIJ]
2213
2284
+
Val
TAC
[ENA]
¡û
>W141242474
CAIK01000039
Cyanobacteriota
Microcystis aeruginosa PCC 7941 [CAIK]
6913
6984
+
Val
TAC
[ENA]
¡û
>W141242545
CAIL01000289
Cyanobacteriota
Microcystis aeruginosa PCC 9806 [CAIL]
1373
1444
+
Val
TAC
[ENA]
¡û
>W141242563
CAIM01000329
Cyanobacteriota
Microcystis aeruginosa PCC 9807 [CAIM]
4431
4360
-
Val
TAC
[ENA]
¡û
>W141242603
CAIN01000162
Cyanobacteriota
Microcystis aeruginosa PCC 9808 [CAIN]
23306
23235
-
Val
TAC
[ENA]
¡û
>W141242635
CAIO01000133
Cyanobacteriota
Microcystis aeruginosa PCC 9809 [CAIO]
3919
3848
-
Val
TAC
[ENA]
¡û
>W141242671
CAIP01000074
Cyanobacteriota
Microcystis sp. T1-4 [CAIP]
9969
9898
-
Val
TAC
[ENA]
¡û
>W141242712
CAIQ01000052
Cyanobacteriota
Microcystis aeruginosa PCC 9701 [CAIQ]
2275
2346
+
Val
TAC
[ENA]
¡û
>C08006362
AP009552
Cyanobacteriota
Microcystis aeruginosa NIES-843 [AP009552]
5144290
5144219
-
Val
TAC
[Ensembl]
¡û
>WENV170681015
LFEF01043746
[LFEF] freshwater metagenome; waterbloom
2306
2377
+
Val
TAC
[ENA]
¢þ
>C181046188
CP020664
Cyanobacteriota
Microcystis sp. MC19 [CP020664]
1065146
1065075
-
Val
TAC
-
¡û
>C191007274
AP019314
Cyanobacteriota
Microcystis viridis NIES-102 [AP019314]
3008938
3008867
-
Val
TAC
-
¡û
>W1910020346
BDSG01000033
Cyanobacteriota
Microcystis aeruginosa Sj [BDSG]
19043
19114
+
Val
TAC
[ENA]
¡û
>W1910020384
BDSM01000009
Cyanobacteriota
Microcystis sp. 0824 [BDSM]
63374
63445
+
Val
TAC
[ENA]
¡û
>W1910038672
BEIU01000017
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEIU]
38563
38492
-
Val
TAC
[ENA]
¡û
>W1910038704
BEIV01000034
Cyanobacteriota
Microcystis aeruginosa NIES-1211 [BEIV]
9548
9477
-
Val
TAC
[ENA]
¡û
>W1910067363
BEYQ01000008
Cyanobacteriota
Microcystis aeruginosa NIES-298 [BEYQ]
167180
167251
+
Val
TAC
[ENA]
¡û
>W1910067390
BFAC01000002
Cyanobacteriota
Microcystis aeruginosa NIES-87 [BFAC]
158014
158085
+
Val
TAC
[ENA]
¡û
>W1910142351
BIFY01000182
Cyanobacteriota
Microcystis aeruginosa NIES-4285 [BIFY]
2465
2536
+
Val
TAC
[ENA]
¡û
>W1910665587
MCIH01000217
Cyanobacteriota
Microcystis aeruginosa CACIAM 03 [MCIH]
3676
3605
-
Val
TAC
[ENA]
¡û
>W1910768683
MOLZ01000117
Cyanobacteriota
Microcystis aeruginosa CHAOHU 1326 [MOLZ]
14001
14072
+
Val
TAC
[ENA]
¡û
>C151079379
CP011304
Cyanobacteriota
Microcystis aeruginosa NIES-2549 [CP011304]
2629042
2628971
-
Val
TAC
[Ensembl]
¡û
>C151080686
CP011339
Cyanobacteriota
Microcystis panniformis FACHB-1757 [CP011339]
301928
301999
+
Val
TAC
-
¡û
>W1510013620
BBPA01000021
Cyanobacteriota
Microcystis aeruginosa NIES-44 [BBPA]
42881
42810
-
Val
TAC
[ENA]
¡û
>W1610550830
JXYX01000008
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
42119
42190
+
Val
TAC
[ENA]
¡û
>W1710004752
AJHB01001700
Cyanobacteriota
Microcystis aeruginosa FCY-26 [AJHB]
2198
2127
-
Val
TAC
[ENA]
¡û
>W1710005102
AJUS01001782
Cyanobacteriota
Microcystis aeruginosa FCY-27 [AJUS]
2901
2830
-
Val
TAC
[ENA]
¡û
>W1710005139
AJUT01001672
Cyanobacteriota
Microcystis aeruginosa FCY-28 [AJUT]
3698
3627
-
Val
TAC
[ENA]
¡û
>W1710005175
AJUU01001662
Cyanobacteriota
Microcystis aeruginosa NIES-298 [AJUU]
3693
3622
-
Val
TAC
[ENA]
¡û
>W1710660707
JXYX01000008
Cyanobacteriota
Microcystis aeruginosa NIES-88 [JXYX]
42119
42190
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK