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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653746 (28 seq.)
>W1711504004
MKUD01000042
Bacteroidota
Spirosoma sp. 48-14 [MKUD]
231
159
-
Glu
TTC
[ENA]
¡û
>W1711606562
MORL01000001
Bacteroidota
Arsenicibacter rosenii [MORL]
819025
818953
-
Glu
TTC
[ENA]
¡û
>W1711606563
MORL01000001
Bacteroidota
Arsenicibacter rosenii [MORL]
818896
818824
-
Glu
TTC
[ENA]
¡û
>W1711606564
MORL01000001
Bacteroidota
Arsenicibacter rosenii [MORL]
818767
818695
-
Glu
TTC
[ENA]
¡û
>W1711606565
MORL01000001
Bacteroidota
Arsenicibacter rosenii [MORL]
818638
818566
-
Glu
TTC
[ENA]
¡û
>W1711606566
MORL01000001
Bacteroidota
Arsenicibacter rosenii [MORL]
818509
818437
-
Glu
TTC
[ENA]
¡û
>W1711606567
MORL01000001
Bacteroidota
Arsenicibacter rosenii [MORL]
818380
818308
-
Glu
TTC
[ENA]
¡û
>W1711769460
MVEC01000007
Bacteroidota
Spirosoma sp. 209 [MVEC]
115617
115691
+
Glu
TTC
[ENA]
¡û
>C171030751
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
2988332
2988258
-
Glu
TTC
-
¡û
>C171104408
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
3686593
3686521
-
Glu
TTC
-
¡û
>C171104438
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
3549369
3549443
+
Glu
TTC
-
¡û
>W131169809
ARFA01000013
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
241927
241853
-
Glu
TTC
[ENA]
¡û
>W131169907
ARFC01000020
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
49101
49175
+
Glu
TTC
[ENA]
¡û
>W131169948
ARFD01000144
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
7426
7352
-
Glu
TTC
[ENA]
¡û
>W131181669
ARPG01000002
Bacteroidota
Rudanella lutea DSM 19387 [ARPG]
5288260
5288334
+
Glu
TTC
[ENA]
¡û
>WENV170984043
MWVV01152417
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
381
455
+
Glu
TTC
[ENA]
¢þ
>C181113119
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
1811532
1811604
+
Glu
TTC
-
¡û
>W09109928
ABUR01000017
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
152265
152193
-
Glu
TTC
[ENA]
¡û
>W1911497267
OCNH01000001
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
2540468
2540396
-
Glu
TTC
[ENA]
¡û
>W1810364374
PVTE01000008
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
106360
106287
-
Glu
TTC
[ENA]
¡û
>W1810692110
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
597515
597443
-
Glu
TTC
[ENA]
¡û
>SRA1015814
SRR023846.209564
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
122
50
-
Glu
TTC
[SRA]
>SRA1015852
SRR023846.228181
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
120
48
-
Glu
TTC
[SRA]
>C151068606
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
2236308
2236382
+
Glu
TTC
[Ensembl]
¡û
>C10111795
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
3056529
3056457
-
Glu
TTC
[Ensembl]
¡û
>C161105002
HE796683
Bacteroidota
Fibrella aestuarina BUZ 2 [HE796683]
4378787
4378713
-
Glu
TTC
[Ensembl]
¡û
>C161105003
HE796683
Bacteroidota
Fibrella aestuarina BUZ 2 [HE796683]
4377463
4377389
-
Glu
TTC
[Ensembl]
¡û
>W1710558218
FOLQ01000040
Bacteroidota
Spirosoma endophyticum [FOLQ]
7740
7668
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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