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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653874 (131 seq.)
>W1711284846
LZRO01000024
Bacteroidota
Bizionia sp. APA-3 [LZRO]
30646
30720
+
Glu
TTC
[ENA]
¡û
>W1711621251
MPCX01000011
Bacteroidota
Lacinutrix sp. MedPE-SW [MPCX]
123122
123048
-
Glu
TTC
[ENA]
¡û
>C171059711
CP017260
Bacteroidota
Formosa sp. Hel1_33_131 [CP017260]
1943737
1943811
+
Glu
TTC
-
¡û
>C171092573
CP019352
Bacteroidota
Lacinutrix venerupis DOK2-8 [CP019352]
1026759
1026685
-
Glu
TTC
-
¡û
>W131066930
ANPJ01000008
Bacteroidota
Dokdonia sp. PRO95 [ANPJ]
25616
25544
-
Glu
TTC
[ENA]
¡û
>W131066931
ANPJ01000008
Bacteroidota
Dokdonia sp. PRO95 [ANPJ]
25496
25422
-
Glu
TTC
[ENA]
¡û
>W131211407
ATMR01000002
Bacteroidota
Winogradskyella psychrotolerans RS-3 [ATMR]
65968
65894
-
Glu
TTC
[ENA]
¡û
>w015439
AAPD01000002
Bacteroidota
Flavobacteria bacterium BBFL7 [AAPD]
433689
433613
-
Glu
TTC
[ENA]
¡û
>w013057
AAMZ01000009
Bacteroidota
Dokdonia sp. MED134 MED134 [AAMZ]
78025
77949
-
Glu
TTC
[ENA]
¡û
>w013056
AAMZ01000009
Bacteroidota
Dokdonia sp. MED134 MED134 [AAMZ]
78153
78082
-
Glu
TTC
[ENA]
¡û
>WENV180367412
OBOE01079462
[OBOE] marine metagenome; ENVO:00002010
81
9
-
Glu
TTC
[ENA]
¢þ
>WENV180383159
OBOU01004579
[OBOU] marine metagenome; ENV:00002010
546
618
+
Glu
TTC
[ENA]
¢þ
>WENV180383687
OBOV01006961
[OBOV] marine metagenome; ENV:00002010
439
367
-
Glu
TTC
[ENA]
¢þ
>WENV180388475
OBPH01010204
[OBPH] marine metagenome; Sterile flask
524
450
-
Glu
TTC
[ENA]
¢þ
>WENV180397953
OBPZ01033077
[OBPZ] marine metagenome; ENVO:00002010
153
81
-
Glu
TTC
[ENA]
¢þ
>WENV181325654
OFLJ01011761
[OFLJ] seawater metagenome; seawater
177
105
-
Glu
TTC
[ENA]
¢þ
>WENV181392873
OFRX01011784
[OFRX] seawater metagenome; seawater
118
46
-
Glu
TTC
[ENA]
¢þ
>WENV182540531
OJAJ01008031
[OJAJ] seawater metagenome; Sea water
429
501
+
Glu
TTC
[ENA]
¢þ
>WENV182541061
OJAQ01005565
[OJAQ] seawater metagenome; Sea water
547
475
-
Glu
TTC
[ENA]
¢þ
>WENV182544295
OJBF01002627
[OJBF] seawater metagenome; Sea water
156
228
+
Glu
TTC
[ENA]
¢þ
>WENV182545670
OJBN01012915
[OJBN] seawater metagenome; Sea water
746
674
-
Glu
TTC
[ENA]
¢þ
>WENV182546575
OJBP01000236
[OJBP] seawater metagenome; Sea water
22150
22078
-
Glu
TTC
[ENA]
¢þ
>WENV182548512
OJBW01001110
[OJBW] seawater metagenome; Sea water
2330
2258
-
Glu
TTC
[ENA]
¢þ
>WENV182553532
OJCR01009701
[OJCR] seawater metagenome; Sea water
1944
2016
+
Glu
TTC
[ENA]
¢þ
>WENV182556551
OJDG01016475
[OJDG] seawater metagenome; Sea water
838
766
-
Glu
TTC
[ENA]
¢þ
>WENV182557828
OJDL01000086
[OJDL] seawater metagenome; Sea water
5164
5236
+
Glu
TTC
[ENA]
¢þ
>WENV182558451
OJDM01003483
[OJDM] seawater metagenome; Sea water
1441
1369
-
Glu
TTC
[ENA]
¢þ
>WENV182559348
OJDO01023918
[OJDO] seawater metagenome; Sea water
416
344
-
Glu
TTC
[ENA]
¢þ
>WENV182561097
OJDV01004873
[OJDV] seawater metagenome; Sea water
2059
2131
+
Glu
TTC
[ENA]
¢þ
>WENV182561645
OJDX01000253
[OJDX] seawater metagenome; Sea water
7591
7519
-
Glu
TTC
[ENA]
¢þ
>WENV182561999
OJDY01000584
[OJDY] seawater metagenome; Sea water
1244
1172
-
Glu
TTC
[ENA]
¢þ
>WENV182563138
OJEB01000644
[OJEB] seawater metagenome; Sea water
2004
1932
-
Glu
TTC
[ENA]
¢þ
>WENV182564133
OJEE01000264
[OJEE] seawater metagenome; Sea water
8214
8142
-
Glu
TTC
[ENA]
¢þ
>WENV182564441
OJEF01000184
[OJEF] seawater metagenome; Sea water
4535
4607
+
Glu
TTC
[ENA]
¢þ
>WENV182565194
OJEH01000291
[OJEH] seawater metagenome; Sea water
4597
4669
+
Glu
TTC
[ENA]
¢þ
>WENV182569098
OJEY01000541
[OJEY] seawater metagenome; Sea water
4535
4607
+
Glu
TTC
[ENA]
¢þ
>WENV182570039
OJFB01005335
[OJFB] seawater metagenome; Sea water
1575
1503
-
Glu
TTC
[ENA]
¢þ
>WENV182572412
OJFL01006315
[OJFL] seawater metagenome; Sea water
1475
1547
+
Glu
TTC
[ENA]
¢þ
>WENV182575060
OJFS01030644
[OJFS] seawater metagenome; Sea water
382
310
-
Glu
TTC
[ENA]
¢þ
>WENV182575832
OJFW01005042
[OJFW] seawater metagenome; Sea water
444
372
-
Glu
TTC
[ENA]
¢þ
>WENV182576027
OJFX01001615
[OJFX] seawater metagenome; Sea water
1610
1538
-
Glu
TTC
[ENA]
¢þ
>WENV182576660
OJFY01000895
[OJFY] seawater metagenome; Sea water
2370
2298
-
Glu
TTC
[ENA]
¢þ
>WENV182578004
OJGM01000406
[OJGM] seawater metagenome; Sea water
3429
3501
+
Glu
TTC
[ENA]
¢þ
>WENV182580904
OJGW01025926
[OJGW] seawater metagenome; Sea water
389
461
+
Glu
TTC
[ENA]
¢þ
>WENV182581312
OJGX01002731
[OJGX] seawater metagenome; Sea water
3331
3403
+
Glu
TTC
[ENA]
¢þ
>WENV182582219
OJHA01001152
[OJHA] seawater metagenome; Sea water
465
393
-
Glu
TTC
[ENA]
¢þ
>WENV182582582
OJHB01002133
[OJHB] seawater metagenome; Sea water
1696
1768
+
Glu
TTC
[ENA]
¢þ
>WENV182587668
OJHN01001248
[OJHN] seawater metagenome; Sea water
2502
2574
+
Glu
TTC
[ENA]
¢þ
>WENV182590797
OJIK01000678
[OJIK] seawater metagenome; Sea water
5090
5018
-
Glu
TTC
[ENA]
¢þ
>WENV182592693
OJIR01010708
[OJIR] seawater metagenome; Sea water
1039
1111
+
Glu
TTC
[ENA]
¢þ
>WENV182594073
OJIV01000238
[OJIV] seawater metagenome; Sea water
19982
19910
-
Glu
TTC
[ENA]
¢þ
>W141276316
JADR01000005
Bacteroidota
Olleya marilimosa CAM030 [JADR]
4798
4872
+
Glu
TTC
[ENA]
¡û
>W141276369
JADS01000030
Bacteroidota
Olleya sp. VCSA23 [JADS]
4931
5005
+
Glu
TTC
[ENA]
¡û
>W141276401
JADT01000021
Bacteroidota
Olleya sp. VCSM12 [JADT]
93223
93149
-
Glu
TTC
[ENA]
¡û
>WENV183054613
OLGU01000363
[OLGU] seawater metagenome; Sea water
6506
6434
-
Glu
TTC
[ENA]
¢þ
>WENV183055068
OLGW01003754
[OLGW] seawater metagenome; Sea water
317
245
-
Glu
TTC
[ENA]
¢þ
>WENV183060250
OLHX01000410
[OLHX] seawater metagenome; Sea water
3282
3210
-
Glu
TTC
[ENA]
¢þ
>WENV183060703
OLHY01002316
[OLHY] seawater metagenome; Sea water
2582
2654
+
Glu
TTC
[ENA]
¢þ
>WENV183065012
OLII01009863
[OLII] seawater metagenome; Sea water
781
709
-
Glu
TTC
[ENA]
¢þ
>WENV183615789
OOEB01148867
[OOEB] marine metagenome; sea ice
193
121
-
Glu
TTC
[ENA]
¢þ
>WENV183616177
OOEC01133386
[OOEC] marine metagenome; sea ice
182
254
+
Glu
TTC
[ENA]
¢þ
>WENV183619452
OOFQ01007460
[OOFQ] marine metagenome; seawater
1236
1308
+
Glu
TTC
[ENA]
¢þ
>WENV183620262
OOFR01019542
[OOFR] marine metagenome; seawater
747
675
-
Glu
TTC
[ENA]
¢þ
>WENV183621706
OOFU01034928
[OOFU] marine metagenome; sea ice
510
438
-
Glu
TTC
[ENA]
¢þ
>WENV183623033
OOFX01003042
[OOFX] marine metagenome; sea ice
402
330
-
Glu
TTC
[ENA]
¢þ
>WENV183623786
OOGA01083229
[OOGA] marine metagenome; sea ice
334
262
-
Glu
TTC
[ENA]
¢þ
>WENV183625619
OOGG01004016
[OOGG] marine metagenome; sea ice
457
385
-
Glu
TTC
[ENA]
¢þ
>WENV183629241
OOGP01012861
[OOGP] marine metagenome; seawater
928
1000
+
Glu
TTC
[ENA]
¢þ
>WENV170298031
CESF01038240
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
32638
32564
-
Glu
TTC
[ENA]
¢þ
>WENV170304395
CESI01040378
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
444
518
+
Glu
TTC
[ENA]
¢þ
>WENV170315557
CESO01134140
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1383
1457
+
Glu
TTC
[ENA]
¢þ
>WENV170603325
FUWD010302049
[FUWD] metagenome; unknown
74
2
-
Glu
TTC
[ENA]
¢þ
>WENV170647602
JQIA01040233
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
11
85
+
Glu
TTC
[ENA]
¢þ
>WENV170782715
MAAC01011181
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
4756
4830
+
Glu
TTC
[ENA]
¢þ
>WENV170783420
MAAC01016732
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
21435
21509
+
Glu
TTC
[ENA]
¢þ
>WENV170783568
MAAC01017904
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
22760
22686
-
Glu
TTC
[ENA]
¢þ
>WENV170783856
MAAC01019224
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
86966
86892
-
Glu
TTC
[ENA]
¢þ
>WENV170818808
MDSX01079377
[MDSX] marine metagenome; seawater
4497
4571
+
Glu
TTC
[ENA]
¢þ
>WENV170825179
MDSY01088484
[MDSY] marine metagenome; seawater
98
24
-
Glu
TTC
[ENA]
¢þ
>WENV170923430
MDTG01049306
[MDTG] marine metagenome; seawater
466
392
-
Glu
TTC
[ENA]
¢þ
>WENV170935490
MDTG01257906
[MDTG] marine metagenome; seawater
4475
4549
+
Glu
TTC
[ENA]
¢þ
>WENV170938011
MDTG01301998
[MDTG] marine metagenome; seawater
4
78
+
Glu
TTC
[ENA]
¢þ
>WENV170948463
MEHZ011202956
[MEHZ] marine metagenome; marine surface water
438
512
+
Glu
TTC
[ENA]
¢þ
>C181113307
CP025116
Bacteroidota
Nonlabens sp. MB-3u-79 [CP025116]
348087
348015
-
Glu
TTC
-
¡û
>C181175171
CP029151
Bacteroidota
Dokdonia sp. Dokd-P16 [CP029151]
237563
237635
+
Glu
TTC
-
¡û
>C181175172
CP029151
Bacteroidota
Dokdonia sp. Dokd-P16 [CP029151]
237683
237755
+
Glu
TTC
-
¡û
>C181202832
CP031612
Bacteroidota
Olleya aquimaris DAU311 [CP031612]
1406839
1406767
-
Glu
TTC
-
¡û
>C191127234
CP034549
Bacteroidota
Nonlabens ponticola MJ115 [CP034549]
1246500
1246572
+
Glu
TTC
-
¡û
>W141805199
JPJI01000026
Bacteroidota
Nonlabens ulvanivorans [JPJI]
657156
657082
-
Glu
TTC
[ENA]
¡û
>W1910693681
MDGO01000041
Bacteroidota
Gaetbulibacter sp. 5U11 [MDGO]
333588
333516
-
Glu
TTC
[ENA]
¡û
>W1910785635
MQUC01000003
Bacteroidota
Nonlabens agnitus JCM 17109 [MQUC]
1933017
1932945
-
Glu
TTC
[ENA]
¡û
>W1910785722
MQVW01000024
Bacteroidota
Nonlabens xylanidelens DSM 16809 [MQVW]
640742
640670
-
Glu
TTC
[ENA]
¡û
>W1910805304
MTPW01000001
Bacteroidota
Nonlabens arenilitoris KCTC 32109 [MTPW]
2029300
2029372
+
Glu
TTC
[ENA]
¡û
>W1810157338
PJBW01000006
Bacteroidota
Olleya sp. 1-3 [PJBW]
277717
277645
-
Glu
TTC
[ENA]
¡û
>W1810296290
PTJE01000006
Bacteroidota
Nonlabens xylanidelens DSM 16809 [PTJE]
25167
25239
+
Glu
TTC
[ENA]
¡û
>W1810356568
PVNA01000002
Bacteroidota
Nonlabens ulvanivorans DSM 22727 [PVNA]
634660
634588
-
Glu
TTC
[ENA]
¡û
>W1810385497
PXOQ01000009
Bacteroidota
Aurantibacter aestuarii KCTC 32269 [PXOQ]
886595
886523
-
Glu
TTC
[ENA]
¡û
>W1810685953
QKZR01000002
Bacteroidota
Nonlabens dokdonensis DSM 17205 [QKZR]
31100
31172
+
Glu
TTC
[ENA]
¡û
>W1810759620
QPJO01000003
Bacteroidota
Winogradskyella arenosi CECT 7958 [QPJO]
562423
562351
-
Glu
TTC
[ENA]
¡û
>W1810787613
QRDV01000001
Bacteroidota
Winogradskyella eximia CECT 7946 [QRDV]
1276162
1276234
+
Glu
TTC
[ENA]
¡û
>W1810788339
QREI01000004
Bacteroidota
Winogradskyella pacifica CECT 7948 [QREI]
4842
4914
+
Glu
TTC
[ENA]
¡û
>W1810885412
QUNH01000002
Bacteroidota
Winogradskyella sediminis DSM 28134 [QUNH]
424958
425030
+
Glu
TTC
[ENA]
¡û
>C151002371
AP014583
Bacteroidota
Winogradskyella sp. PG-2 [AP014583]
456703
456629
-
Glu
TTC
[Ensembl]
¡û
>C151048577
CP009301
Bacteroidota
Dokdonia sp. MED134 [CP009301]
3151504
3151430
-
Glu
TTC
[Ensembl]
¡û
>C151048578
CP009301
Bacteroidota
Dokdonia sp. MED134 [CP009301]
3151375
3151301
-
Glu
TTC
[Ensembl]
¡û
>SRA1028082
SRR035086.255052
454 Sequencing (SRP001807)
200
128
-
Glu
TTC
[SRA]
>WENV037618
AACY021870125
Marine microbial communities from Global Ocean Sampling (GOS)
687
611
-
Glu
TTC
[ENA]
>C11111618
CP002528
Bacteroidota
Dokdonia sp. 4H-3-7-5 [CP002528]
2413832
2413760
-
Glu
TTC
[Ensembl]
¡û
>C11111619
CP002528
Bacteroidota
Dokdonia sp. 4H-3-7-5 [CP002528]
2413712
2413638
-
Glu
TTC
[Ensembl]
¡û
>C11111997
CP002825
Bacteroidota
Lacinutrix sp. 5H-3-7-4 [CP002825]
381063
380989
-
Glu
TTC
[Ensembl]
¡û
>W1511360737
JSAQ01000001
Bacteroidota
Dokdonia donghaensis DSW-1 [JSAQ]
3055584
3055510
-
Glu
TTC
[ENA]
¡û
>W1511360738
JSAQ01000001
Bacteroidota
Dokdonia donghaensis DSW-1 [JSAQ]
3055455
3055381
-
Glu
TTC
[ENA]
¡û
>W1511388598
JSWG01000001
Bacteroidota
Psychroserpens jangbogonensis PAMC 27130 [JSWG]
397342
397268
-
Glu
TTC
[ENA]
¡û
>W1511432820
JUGU01000001
Bacteroidota
Psychroserpens sp. Hel_I_66 [JUGU]
545368
545442
+
Glu
TTC
[ENA]
¡û
>W1511505225
JXJO01000034
Bacteroidota
Psychroserpens damuponensis JCM 17632 [JXJO]
132679
132605
-
Glu
TTC
[ENA]
¡û
>W11152635
AEYR01000009
Bacteroidota
Lacinutrix sp. 5H-3-7-4 5H-3-7-4 [AEYR]
5114
5188
+
Glu
TTC
[ENA]
¡û
>W11176842
AFXZ01000022
Bacteroidota
Bizionia argentinensis JUB59 [AFXZ]
18153
18227
+
Glu
TTC
[ENA]
¡û
>C161000300
AP014548
Bacteroidota
Nonlabens marinus S1-08 [AP014548]
1634938
1635012
+
Glu
TTC
[Ensembl]
¡û
>C161083535
CP015125
Bacteroidota
Dokdonia donghaensis DSW-1 [CP015125]
1832107
1832033
-
Glu
TTC
-
¡û
>C161083536
CP015125
Bacteroidota
Dokdonia donghaensis DSW-1 [CP015125]
1831978
1831904
-
Glu
TTC
-
¡û
>W1610060566
BCBW01000024
Bacteroidota
Olleya sp. ITB9 [BCBW]
15551
15477
-
Glu
TTC
[ENA]
¡û
>C131001093
CP001397
Bacteroidota
Nonlabens dokdonensis DSW-6 [CP001397]
2318487
2318561
+
Glu
TTC
[Ensembl]
¡û
>W1610584190
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
3116538
3116464
-
Glu
TTC
[ENA]
¡û
>W1610633024
LIQI01000031
Bacteroidota
Lacinutrix himadriensis [LIQI]
16306
16378
+
Glu
TTC
[ENA]
¡û
>W1611042631
LZRO01000024
Bacteroidota
Bizionia sp. APA-3 [LZRO]
30646
30720
+
Glu
TTC
[ENA]
¡û
>W1710057821
BCBW01000024
Bacteroidota
Olleya sp. ITB9 [BCBW]
15551
15477
-
Glu
TTC
[ENA]
¡û
>W1710516991
FNCZ01000006
Bacteroidota
Winogradskyella thalassocola [FNCZ]
5571
5645
+
Glu
TTC
[ENA]
¡û
>W1710559057
FOMI01000009
Bacteroidota
Algibacter pectinivorans [FOMI]
28709
28783
+
Glu
TTC
[ENA]
¡û
>W1710565815
FORM01000005
Bacteroidota
Olleya namhaensis [FORM]
288867
288793
-
Glu
TTC
[ENA]
¡û
>W1710703338
LBMJ01000001
Bacteroidota
Nonlabens sp. YIK11 [LBMJ]
3116538
3116464
-
Glu
TTC
[ENA]
¡û
>W1710767456
LIQI01000031
Bacteroidota
Lacinutrix himadriensis [LIQI]
16306
16378
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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