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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653889 (23 seq.)
>WENV181408924
OGCH01023979
[OGCH] hot springs metagenome; hot springs
214
288
+
Val
GAC
[ENA]
¢þ
>C08011008
CP000812
Thermotogota
Pseudothermotoga lettingae TMO [CP000812]
1809178
1809252
+
Val
GAC
[Ensembl]
¡û
>WENV170675715
LDZQ01000371
[LDZQ] terrestrial metagenome; oil reservoir sample I2
47172
47246
+
Val
GAC
[ENA]
¢þ
>WENV170676070
LDZR01000710
[LDZR] terrestrial metagenome; oil reservoir sample K2
1100
1174
+
Val
GAC
[ENA]
¢þ
>WENV170676435
LDZR01002678
[LDZR] terrestrial metagenome; oil reservoir sample K2
47172
47246
+
Val
GAC
[ENA]
¢þ
>WENV170779374
LZQN01003808
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
759
833
+
Val
GAC
[ENA]
¢þ
>W09113939
ABZD01000008
Thermotogota
Kosmotoga olearia TBF 19.5.1 [ABZD]
110648
110722
+
Val
GAC
[ENA]
¡û
>W141561621
JHYP01000001
Thermotogota
Pseudothermotoga elfii DSM 9442 [JHYP]
519641
519567
-
Val
GAC
[ENA]
¡û
>W141778853
JONI01000005
Thermotogota
Pseudothermotoga hypogea DSM 11164 [JONI]
347917
347991
+
Val
GAC
[ENA]
¡û
>C141000344
AP014507
Thermotogota
Pseudothermotoga elfii DSM 9442 = NBRC 107921 [AP014507]
1844334
1844408
+
Val
GAC
-
¡û
>C141000403
AP014508
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [AP014508]
1250291
1250217
-
Val
GAC
-
¡û
>C09106813
CP001634
Thermotogota
Kosmotoga olearia TBF 19.5.1 [CP001634]
1842197
1842123
-
Val
GAC
[Ensembl]
¡û
>C151001645
AP014509
Thermotogota
Thermotoga caldifontis AZM44c09 [AP014509]
1840079
1840153
+
Val
GAC
-
¡û
>C151078461
CP011232
Thermotogota
Kosmotoga pacifica SLHLJ1 [CP011232]
725322
725396
+
Val
GAC
[Ensembl]
¡û
>C161005082
CP007141
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [CP007141]
543284
543358
+
Val
GAC
[Ensembl]
¡û
>W1610520968
JGCK01000064
Thermotogota
Kosmotoga sp. DU53 [JGCK]
22726
22652
-
Val
GAC
[ENA]
¡û
>W1610612517
LGEV01000004
Thermotogota
Thermotoga sp. 50_64 [LGEV]
47172
47246
+
Val
GAC
[ENA]
¡û
>W1610612890
LGFF01000089
Thermotogota
Pseudothermotoga lettingae [LGFF]
1100
1174
+
Val
GAC
[ENA]
¡û
>W1610612940
LGFH01000002
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
47172
47246
+
Val
GAC
[ENA]
¡û
>W1710617218
JGCK01000064
Thermotogota
Kosmotoga sp. DU53 [JGCK]
22726
22652
-
Val
GAC
[ENA]
¡û
>W1710733915
LGEV01000004
Thermotogota
Thermotoga sp. 50_64 [LGEV]
47172
47246
+
Val
GAC
[ENA]
¡û
>W1710734172
LGFF01000089
Thermotogota
Pseudothermotoga lettingae [LGFF]
1100
1174
+
Val
GAC
[ENA]
¡û
>W1710734222
LGFH01000002
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
47172
47246
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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