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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653944 (107 seq.)
>W1710777850
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
2098937
2099011
+
Gly
GCC
[ENA]
¡û
>W1710777884
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
382664
382590
-
Gly
GCC
[ENA]
¡û
>W1710777915
LJCF01000002
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
27771
27845
+
Gly
GCC
[ENA]
¡û
>W1710777935
LJCF01000003
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
312690
312616
-
Gly
GCC
[ENA]
¡û
>W1711227892
LXWA01000076
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
14962
15036
+
Gly
GCC
[ENA]
¡û
>W1711303118
MAJM01000004
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
199123
199197
+
Gly
GCC
[ENA]
¡û
>W1711303129
MAJM01000004
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
811626
811552
-
Gly
GCC
[ENA]
¡û
>W1711683000
MRYC01000007
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
154168
154242
+
Gly
GCC
[ENA]
¡û
>C171019125
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
2578197
2578271
+
Gly
GCC
-
¡û
>C171131087
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
2767418
2767344
-
Gly
GCC
-
¡û
>C171131090
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
1295383
1295309
-
Gly
GCC
-
¡û
>C015829
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
2195921
2195847
-
Gly
GCC
[Ensembl]
¡û
>C015832
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1025668
1025594
-
Gly
GCC
[Ensembl]
¡û
>C015991
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
2531088
2531014
-
Gly
GCC
[Ensembl]
¡û
>C015995
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
1149881
1149807
-
Gly
GCC
[Ensembl]
¡û
>WENV180101024
OAOU01000002
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
155209
155283
+
Gly
GCC
[ENA]
¢þ
>WENV180101027
OAOU01000005
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
133835
133761
-
Gly
GCC
[ENA]
¢þ
>WENV180101047
OAOU01000051
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
8210
8284
+
Gly
GCC
[ENA]
¢þ
>WENV180101064
OAOU01000096
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
7143
7217
+
Gly
GCC
[ENA]
¢þ
>w003216
AADI01000003
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
6219
6295
+
Gly
GCC
[ENA]
¡û
>w003211
AADI01000001
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
42068
41992
-
Gly
GCC
[ENA]
¡û
>W141086171
AUSW01000016
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
85635
85709
+
Gly
GCC
[ENA]
¡û
>W141086197
AUSW01000035
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
15693
15619
-
Gly
GCC
[ENA]
¡û
>WENV181201400
OERN01010111
[OERN] metagenome; water of meat washing
76
150
+
Gly
GCC
[ENA]
¢þ
>W141199926
AYXM01000009
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
21727
21801
+
Gly
GCC
[ENA]
¡û
>W141199943
AYXM01000033
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
168976
169050
+
Gly
GCC
[ENA]
¡û
>W141200513
AYXZ01000083
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
21668
21742
+
Gly
GCC
[ENA]
¡û
>W141200540
AYXZ01000157
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
67148
67074
-
Gly
GCC
[ENA]
¡û
>W141200555
AYYA01000010
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
45239
45165
-
Gly
GCC
[ENA]
¡û
>W141200580
AYYA01000055
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
168976
169050
+
Gly
GCC
[ENA]
¡û
>C08007226
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
2195921
2195850
-
Gly
GCC
[Ensembl]
¡û
>C08007229
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1025668
1025597
-
Gly
GCC
[Ensembl]
¡û
>W141233972
BAWG01000003
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
158965
159039
+
Gly
GCC
[ENA]
¡û
>W141234015
BAWH01000013
Gammaproteobacteria
Psychrobacter sp. JCM 18901 [BAWH]
87929
88003
+
Gly
GCC
[ENA]
¡û
>W141234023
BAWH01000017
Gammaproteobacteria
Psychrobacter sp. JCM 18901 [BAWH]
6036
5962
-
Gly
GCC
[ENA]
¡û
>W141234045
BAWI01000002
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
153879
153953
+
Gly
GCC
[ENA]
¡û
>W141234053
BAWI01000004
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
249635
249561
-
Gly
GCC
[ENA]
¡û
>W141234094
BAWJ01000008
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
158845
158919
+
Gly
GCC
[ENA]
¡û
>W141234102
BAWJ01000012
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
101273
101347
+
Gly
GCC
[ENA]
¡û
>WENV182542203
OJAV01010079
[OJAV] seawater metagenome; Sea water
511
585
+
Gly
GCC
[ENA]
¢þ
>WENV182549796
OJBZ01000041
[OJBZ] seawater metagenome; Sea water
30142
30216
+
Gly
GCC
[ENA]
¢þ
>WENV182549825
OJBZ01000081
[OJBZ] seawater metagenome; Sea water
59627
59701
+
Gly
GCC
[ENA]
¢þ
>WENV182562374
OJDZ01001534
[OJDZ] seawater metagenome; Sea water
7821
7747
-
Gly
GCC
[ENA]
¢þ
>WENV170014606
AYSL01000243
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
398
324
-
Gly
GCC
[ENA]
¢þ
>WENV170014622
AYSL01001364
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
249
175
-
Gly
GCC
[ENA]
¢þ
>WENV170242816
CEQO01087591
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
273
199
-
Gly
GCC
[ENA]
¢þ
>WENV170487787
CEVO01092547
[CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
218
292
+
Gly
GCC
[ENA]
¢þ
>WENV170725999
LSQX01364291
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3770
3696
-
Gly
GCC
[ENA]
¢þ
>WENV170792139
MDSV01094834
[MDSV] marine metagenome; seawater
502
428
-
Gly
GCC
[ENA]
¢þ
>WENV170827284
MDSY01125858
[MDSY] marine metagenome; seawater
2521
2595
+
Gly
GCC
[ENA]
¢þ
>C181056051
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
2914729
2914655
-
Gly
GCC
-
¡û
>C181056068
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
1228512
1228438
-
Gly
GCC
-
¡û
>C191163835
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
451454
451528
+
Gly
GCC
-
¡û
>C191163868
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
1226412
1226338
-
Gly
GCC
-
¡û
>W09103303
AAJC01000002
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
188126
188200
+
Gly
GCC
[ENA]
¡û
>W09103330
AAJC01000023
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
40044
39970
-
Gly
GCC
[ENA]
¡û
>W1910377579
FUKN01000001
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
170306
170380
+
Gly
GCC
[ENA]
¡û
>W1910377585
FUKN01000005
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
16815
16889
+
Gly
GCC
[ENA]
¡û
>W1910891766
NEXU01000037
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
4250
4324
+
Gly
GCC
[ENA]
¡û
>W1910891790
NEXU01000110
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
35081
35155
+
Gly
GCC
[ENA]
¡û
>W1911203664
NRGY01000002
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
468183
468257
+
Gly
GCC
[ENA]
¡û
>W1911203668
NRGY01000002
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
1211600
1211526
-
Gly
GCC
[ENA]
¡û
>W1810155471
PJAS01000063
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
3369
3295
-
Gly
GCC
[ENA]
¡û
>W1810155472
PJAS01000071
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
89846
89920
+
Gly
GCC
[ENA]
¡û
>W1810155495
PJAT01000063
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
45348
45422
+
Gly
GCC
[ENA]
¡û
>W1810155502
PJAT01000090
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
32075
32149
+
Gly
GCC
[ENA]
¡û
>W1810156186
PJBD01000040
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
37581
37655
+
Gly
GCC
[ENA]
¡û
>W1810156317
PJBF01000040
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
199260
199334
+
Gly
GCC
[ENA]
¡û
>W1810156354
PJBF01000064
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
17605
17531
-
Gly
GCC
[ENA]
¡û
>W1810156429
PJBH01000059
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
65081
65155
+
Gly
GCC
[ENA]
¡û
>W1810156434
PJBH01000064
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
15003
15077
+
Gly
GCC
[ENA]
¡û
>W1810157236
PJBU01000013
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
8827
8753
-
Gly
GCC
[ENA]
¡û
>W1810157254
PJBU01000085
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
27899
27973
+
Gly
GCC
[ENA]
¡û
>W1810157375
PJBX01000151
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
12009
12083
+
Gly
GCC
[ENA]
¡û
>W1810157437
PJBY01000105
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
47636
47562
-
Gly
GCC
[ENA]
¡û
>W1810157440
PJBY01000109
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
170983
171057
+
Gly
GCC
[ENA]
¡û
>W1810596395
QGGM01000005
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
27248
27322
+
Gly
GCC
[ENA]
¡û
>W1810596412
QGGM01000011
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
68909
68835
-
Gly
GCC
[ENA]
¡û
>W1810671435
QJSU01000003
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
334634
334560
-
Gly
GCC
[ENA]
¡û
>W1810671447
QJSU01000010
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
431
357
-
Gly
GCC
[ENA]
¡û
>W1810692651
QLKS01000001
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
458617
458691
+
Gly
GCC
[ENA]
¡û
>C151097236
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
2711510
2711436
-
Gly
GCC
-
¡û
>C151097257
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
1013738
1013664
-
Gly
GCC
-
¡û
>C161042754
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
2788169
2788095
-
Gly
GCC
-
¡û
>C161042759
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
1294177
1294103
-
Gly
GCC
-
¡û
>C161042802
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
2897452
2897378
-
Gly
GCC
[Ensembl]
¡û
>C161042807
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
1314012
1313938
-
Gly
GCC
[Ensembl]
¡û
>C161079264
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
2019032
2019106
+
Gly
GCC
[Ensembl]
¡û
>C161079282
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
2793986
2793912
-
Gly
GCC
[Ensembl]
¡û
>W121043510
AHVZ01000020
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
78111
78037
-
Gly
GCC
[ENA]
¡û
>W121043523
AHVZ01000039
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
80333
80259
-
Gly
GCC
[ENA]
¡û
>W1610112391
CZJV02000073
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
55202
55128
-
Gly
GCC
[ENA]
¡û
>W1610112393
CZJV02000077
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
82464
82538
+
Gly
GCC
[ENA]
¡û
>C131017401
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
2566642
2566568
-
Gly
GCC
[Ensembl]
¡û
>C131017405
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
1116591
1116517
-
Gly
GCC
[Ensembl]
¡û
>W1610632740
LIQB01000004
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
208637
208563
-
Gly
GCC
[ENA]
¡û
>W1610632742
LIQB01000005
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
243365
243439
+
Gly
GCC
[ENA]
¡û
>W1610642036
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
2098937
2099011
+
Gly
GCC
[ENA]
¡û
>W1610642070
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
382664
382590
-
Gly
GCC
[ENA]
¡û
>W1610642101
LJCF01000002
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
27771
27845
+
Gly
GCC
[ENA]
¡û
>W1610642121
LJCF01000003
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
312690
312616
-
Gly
GCC
[ENA]
¡û
>W1611011856
LXWA01000076
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
14962
15036
+
Gly
GCC
[ENA]
¡û
>W1710115095
CZJV02000073
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
55202
55128
-
Gly
GCC
[ENA]
¡û
>W1710115097
CZJV02000077
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
82464
82538
+
Gly
GCC
[ENA]
¡û
>W1710513808
FNAL01000006
Gammaproteobacteria
Psychrobacter pacificensis [FNAL]
107077
107151
+
Gly
GCC
[ENA]
¡û
>W1710767172
LIQB01000004
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
208637
208563
-
Gly
GCC
[ENA]
¡û
>W1710767174
LIQB01000005
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
243365
243439
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK