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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.65397 (69 seq.)
>W1710868120
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
949441
949355
-
Leu
TAA
[ENA]
¡û
>W1710907344
LNOS01000043
Alphaproteobacteria
Sphingomonas sp. WG [LNOS]
2668
2582
-
Leu
TAA
[ENA]
¡û
>W1711075296
LSKH01000108
Alphaproteobacteria
Sphingomonas sp. CCH5-D11 [LSKH]
42356
42270
-
Leu
TAA
[ENA]
¡û
>W1711227846
LXVY01000043
Alphaproteobacteria
Sphingomonas sp. TDK1 [LXVY]
51228
51142
-
Leu
TAA
[ENA]
¡û
>W1711632213
MPSB01000013
Alphaproteobacteria
Sphingomonas jeddahensis G39 [MPSB]
87281
87195
-
Leu
TAA
[ENA]
¡û
>W1711942684
NBBI01000004
Alphaproteobacteria
Sphingomonas dokdonensis [NBBI]
272483
272569
+
Leu
TAA
[ENA]
¡û
>C171095064
CP019511
Alphaproteobacteria
Sphingomonas sp. LM7 [CP019511]
4038752
4038666
-
Leu
TAA
-
¡û
>WENV180100135
OAOK01000033
[OAOK] sediment metagenome; sediment
68434
68520
+
Leu
TAA
[ENA]
¡û
>WENV180355061
OBNG01001593
[OBNG] sediment metagenome; sediment
2042
1956
-
Leu
TAA
[ENA]
¡û
>WENV180355301
OBNH01000444
[OBNH] sediment metagenome; sediment
3073
3159
+
Leu
TAA
[ENA]
¡û
>WENV180355837
OBNJ01001071
[OBNJ] sediment metagenome; sediment
2988
3074
+
Leu
TAA
[ENA]
¡û
>WENV180356479
OBNK01035909
[OBNK] sediment metagenome; sediment
269
355
+
Leu
TAA
[ENA]
¡û
>WENV180694694
OCZS012579366
[OCZS] soil metagenome; soil
145
59
-
Leu
TAA
[ENA]
¡û
>WENV181402588
OFTY01006225
[OFTY] sludge metagenome; sludge
1565
1479
-
Leu
TAA
[ENA]
¡û
>WENV183733589
PJTY01005516
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
1642
1728
+
Leu
TAA
[ENA]
¡û
>WENV183733911
PJTZ01000001
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
708572
708486
-
Leu
TAA
[ENA]
¡û
>WENV183737889
PJUD01044499
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
968
1054
+
Leu
TAA
[ENA]
¡û
>WENV183740963
PJUF01022052
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
502
588
+
Leu
TAA
[ENA]
¡û
>WENV183742383
PJUH01019799
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
141
55
-
Leu
TAA
[ENA]
¡û
>WENV183744353
PJUK01010291
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
165
251
+
Val
TAC
[ENA]
¡û
>WENV183745032
PJUL01001451
[PJUL] feces metagenome; Chicken feces enriched on filter paper
7619
7533
-
Leu
TAA
[ENA]
¡û
>WENV170769381
LXNH01052548
[LXNH] seawater metagenome; marine seawater
1405
1491
+
Leu
TAA
[ENA]
¡û
>WENV171003258
NNBT01002956
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
26202
26288
+
Leu
TAA
[ENA]
¡û
>C181108635
CP024923
Alphaproteobacteria
Sphingomonas psychrotolerans Cra20 [CP024923]
4645448
4645362
-
Leu
TAA
-
¡û
>C191144172
CP035501
Alphaproteobacteria
Sphingosinicella sp. BN140058 [CP035501]
4388294
4388208
-
Leu
TAA
-
¡û
>W141779858
JOOE01000002
Alphaproteobacteria
Sphingomonas sp. UNC305MFCol5.2 [JOOE]
692984
693070
+
Leu
TAA
[ENA]
¡û
>W1911719061
QQWW01000003
Alphaproteobacteria
Sphingomonas sp. ABOLG S-NIH.Pt13_0512 [QQWW]
350923
351009
+
Leu
TAA
[ENA]
¡û
>W1911719153
QQWY01000003
Alphaproteobacteria
Sphingomonas sp. ABOLE S-NIH.Pt18_1212 [QQWY]
12345
12259
-
Leu
TAA
[ENA]
¡û
>W1911719201
QQWZ01000003
Alphaproteobacteria
Sphingomonas sp. ABOLD S-NIH.Pt20_1215 [QQWZ]
146316
146402
+
Leu
TAA
[ENA]
¡û
>W1810390282
PXYI01000003
Alphaproteobacteria
Sphingomonas deserti GL-C-18 [PXYI]
509890
509804
-
Leu
TAA
[ENA]
¡û
>W1810576610
QENQ01000001
Alphaproteobacteria
Sphingomonas pokkalii L3B27 [QENQ]
2247626
2247540
-
Leu
TAA
[ENA]
¡û
>W1810577270
QEOD01000001
Alphaproteobacteria
Sphingomonas sp. CF311 [QEOD]
122464
122550
+
Leu
TAA
[ENA]
¡û
>W1810586248
QFFF01000001
Alphaproteobacteria
Sphingosinicella humi QZX222 [QFFF]
14881
14967
+
Leu
TAA
[ENA]
¡û
>C151073224
CP010836
Alphaproteobacteria
Sphingomonas hengshuiensis WHSC-8 [CP010836]
598504
598418
-
Leu
TAA
[Ensembl]
¡û
>W2010474847
JAAILI010000008
Alphaproteobacteria
Sphingomonas sp. S2M10 [JAAILI]
531059
531145
+
Leu
TAA
[ENA]
¡û
>W2010559846
JAASQM010000001
Alphaproteobacteria
Sphingomonas naasensis DSM 100060 [JAASQM]
1148774
1148860
+
Leu
TAA
[ENA]
¡û
>W2010567373
JAATJB010000002
Alphaproteobacteria
Sphingomonas trueperi DSM 7225 [JAATJB]
375868
375782
-
Leu
TAA
[ENA]
¡û
>W2010674395
JACCFG010000002
Alphaproteobacteria
Sphingomonas sp. R-74633 [JACCFG]
36045
36131
+
Leu
TAA
[ENA]
¡û
>W2010708520
JACHLN010000004
Alphaproteobacteria
Sphingomonas kyeonggiensis S00224 [JACHLN]
103946
104032
+
Leu
TAA
[ENA]
¡û
>W2010725620
JACIEH010000001
Alphaproteobacteria
Sphingomonas kyeonggiensis DSM 101806 [JACIEH]
344952
344866
-
Leu
TAA
[ENA]
¡û
>W2011287051
QQWW01000003
Alphaproteobacteria
Sphingomonas sp. ABOLG S-NIH.Pt13_0512 [QQWW]
350923
351009
+
Leu
TAA
[ENA]
¡û
>W2011374136
RBIU01000001
Alphaproteobacteria
Sphingomonas elodea 18a [RBIU]
1990149
1990063
-
Leu
TAA
[ENA]
¡û
>W2011667288
SPDV01000013
Alphaproteobacteria
Sphingomonas sp. 17J27-24 [SPDV]
44152
44238
+
Leu
TAA
[ENA]
¡û
>W2011685889
SRXT01000007
Alphaproteobacteria
Sphingomonas gei ZFGT-11 [SRXT]
175363
175277
-
Leu
TAA
[ENA]
¡û
>W2011685927
SRXU01000008
Alphaproteobacteria
Sphingomonas naasensis KIS18-15 [SRXU]
29149
29235
+
Leu
TAA
[ENA]
¡û
>W2011692526
SSTI01000005
Alphaproteobacteria
Sphingomonas olei NM83_B4-11 [SSTI]
245122
245208
+
Leu
TAA
[ENA]
¡û
>W2011992690
VDUO01000001
Alphaproteobacteria
Sphingomonas dokdonensis DE0458 [VDUO]
2472896
2472982
+
Leu
TAA
[ENA]
¡û
>W2012022420
VFPZ01000001
Alphaproteobacteria
Sphingomonas trueperi 1152a [VFPZ]
1827876
1827962
+
Leu
TAA
[ENA]
¡û
>W2110161293
JAAVVE010000012
Alphaproteobacteria
Sphingomonas sp. dw_22 [JAAVVE]
25356
25442
+
Leu
TAA
[ENA]
¡û
>W2110263412
JACTGR010000004
Alphaproteobacteria
Sphingomonas sp. JC676 [JACTGR]
289365
289279
-
Leu
TAA
[ENA]
¡û
>C231527612
CP110111
Alphaproteobacteria
Sphingomonas sp. R1 [CP110111]
1662482
1662568
+
Leu
TAA
-
¡û
>C231536512
CP110679
Alphaproteobacteria
Sphingomonas sp. S6-11 [CP110679]
3506572
3506486
-
Leu
TAA
-
¡û
>C231562629
CP114791
Alphaproteobacteria
Sphingomonas sp. NIBR 02145 [CP114791]
4825688
4825602
-
Leu
TAA
-
¡û
>C231571815
CP115960
Alphaproteobacteria
Sphingomonas sp. 7/4-4 [CP115960]
4183305
4183219
-
Leu
TAA
-
¡û
>C241365928
CP141588
Alphaproteobacteria
Sphingomonas sp. LY54 [CP141588]
823354
823440
+
Leu
TAA
-
¡û
>W1511587102
LAZX01000094
Alphaproteobacteria
Sphingomonas sp. Ag1 [LAZX]
1152231
1152317
+
Leu
TAA
[ENA]
¡û
>W11179078
AGFU01000082
Alphaproteobacteria
Sphingomonas elodea ATCC 31461 [AGFU]
21269
21183
-
Leu
TAA
[ENA]
¡û
>W1610071339
BCTZ01000015
Alphaproteobacteria
Sphingomonas soli NBRC 100801 [BCTZ]
40778
40864
+
Leu
TAA
[ENA]
¡û
>W1610076691
BCYY01000003
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
86961
87047
+
Leu
TAA
[ENA]
¡û
>W121105819
ALBQ01000028
Alphaproteobacteria
Sphingomonas sp. ATCC 31555 [ALBQ]
2653
2567
-
Leu
TAA
[ENA]
¡û
>W1610730466
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
949441
949355
-
Leu
TAA
[ENA]
¡û
>W1610766358
LNOS01000043
Alphaproteobacteria
Sphingomonas sp. WG [LNOS]
2668
2582
-
Leu
TAA
[ENA]
¡û
>W1611011810
LXVY01000043
Alphaproteobacteria
Sphingomonas sp. TDK1 [LXVY]
51228
51142
-
Leu
TAA
[ENA]
¡û
>W1710068306
BCTR01000024
Alphaproteobacteria
Sphingomonas azotifigens NBRC 15497 [BCTR]
11962
12048
+
Leu
TAA
[ENA]
¡û
>W1710068704
BCTZ01000015
Alphaproteobacteria
Sphingomonas soli NBRC 100801 [BCTZ]
40778
40864
+
Leu
TAA
[ENA]
¡û
>W1710074380
BCYY01000003
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
86961
87047
+
Leu
TAA
[ENA]
¡û
>W1710083084
BDJB01000004
Alphaproteobacteria
Sphingomonas sp. TZW2008 [BDJB]
4387
4301
-
Leu
TAA
[ENA]
¡û
>W1710542335
FNZB01000001
Alphaproteobacteria
Sphingomonas sp. OV641 [FNZB]
119690
119604
-
Leu
TAA
[ENA]
¡û
>W1710566259
FORV01000001
Alphaproteobacteria
Sphingomonas sp. NFR04 [FORV]
845213
845299
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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