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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.654056 (36 seq.)
>W1711091086
LTBC01000001
Bacillota
Moorella mulderi DSM 14980 [LTBC]
241028
240954
-
Gly
CCC
[ENA]
¡û
>W1711352280
MDDB01000003
Bacillota
Moorella thermoacetica [MDDB]
79444
79370
-
Gly
CCC
[ENA]
¡û
>W1711352323
MDDC01000006
Bacillota
Moorella thermoacetica [MDDC]
132521
132447
-
Gly
CCC
[ENA]
¡û
>W1711352390
MDDD01000013
Bacillota
Moorella thermoacetica [MDDD]
30366
30440
+
Gly
CCC
[ENA]
¡û
>W1711352452
MDDE01000014
Bacillota
Moorella thermoacetica [MDDE]
60296
60222
-
Gly
CCC
[ENA]
¡û
>W1711428528
MIHH01000001
Bacillota
Moorella thermoacetica [MIHH]
33618
33544
-
Gly
CCC
[ENA]
¡û
>W1711428611
MIIF01000021
Bacillota
Moorella thermoacetica [MIIF]
184
258
+
Gly
CCC
[ENA]
¡û
>C171055204
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
2771473
2771399
-
Gly
CCC
-
¡û
>C171058970
CP017237
Bacillota
Moorella thermoacetica DSM 103284 [CP017237]
2358428
2358354
-
Gly
CCC
-
¡û
>C014188
CP000232
Bacillota
Moorella thermoacetica [CP000232]
2419242
2419168
-
Gly
CCC
[Ensembl]
¡û
>WENV180655009
OCVV010384890
[OCVV] gut metagenome; gut
542
614
+
Gly
CCC
[ENA]
¢þ
>WENV180655010
OCVV010384890
[OCVV] gut metagenome; gut
542
614
+
Gly
CCC
[ENA]
¢þ
>W141229785
BARR01000019
Bacillota
Moorella thermoacetica Y72 [BARR]
55795
55721
-
Gly
CCC
[ENA]
¡û
>WENV170563210
CZCB01011987
[CZCB] anaerobic digester metagenome; anaerobic digester
11074
11000
-
Gly
CCC
[ENA]
¢þ
>WENV170644042
JMBV01026116
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
398
324
-
Gly
CCC
[ENA]
¢þ
>WENV170644842
JMBW01126396
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
191
117
-
Gly
CCC
[ENA]
¢þ
>WENV170676410
LDZR01002572
[LDZR] terrestrial metagenome; oil reservoir sample K2
4946
5020
+
Gly
CCC
[ENA]
¢þ
>WENV170684896
LFRM01063662
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
33492
33566
+
Gly
CCC
[ENA]
¢þ
>WENV170725144
LSQX01332145
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7333
7259
-
Gly
CCC
[ENA]
¢þ
>WENV170726099
LSQX01367712
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
272
198
-
Gly
CCC
[ENA]
¢þ
>WENV170967654
MTKW01002675
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
282
356
+
Gly
CCC
[ENA]
¢þ
>C191073446
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
2435670
2435596
-
Gly
CCC
-
¡û
>W09100916
AADT03000001
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
143105
143031
-
Gly
CCC
[ENA]
¡û
>W1910180063
BJKN01000001
Bacillota
Moorella sp. E308F [BJKN]
484231
484157
-
Gly
CCC
[ENA]
¡û
>W1910180099
BJKO01000001
Bacillota
Moorella sp. E306M [BJKO]
1463523
1463597
+
Gly
CCC
[ENA]
¡û
>W1911726615
QSNL01000015
Bacillota
Thermoanaerobacteraceae bacterium SP2 [QSNL]
17857
17931
+
Gly
CCC
[ENA]
¡û
>W1810367305
PVXL01000058
Bacillota
Moorella stamsii DSM 26271 [PVXL]
387
313
-
Gly
CCC
[ENA]
¡û
>W1810367342
PVXM01000028
Bacillota
Moorella humiferrea DSM 23265 [PVXM]
27157
27231
+
Gly
CCC
[ENA]
¡û
>C151094425
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
2413458
2413384
-
Gly
CCC
-
¡û
>W1510100253
CELZ01000018
Bacillota
Moorella glycerini NMP [CELZ]
5901
5975
+
Gly
CCC
[ENA]
¡û
>C10113533
CP002131
Bacillota
Thermosediminibacter oceani DSM 16646 [CP002131]
2247670
2247596
-
Gly
CCC
[Ensembl]
¡û
>W1511570785
LAKY01000053
Bacillota
Clostridiales bacterium PH28_bin88 [LAKY]
90253
90179
-
Gly
CCC
[ENA]
¡û
>W1610606049
LFSN01000029
Bacillota
Clostridia bacterium DTU030 [LFSN]
33492
33566
+
Gly
CCC
[ENA]
¡û
>W1610925285
LTBC01000001
Bacillota
Moorella mulderi DSM 14980 [LTBC]
241028
240954
-
Gly
CCC
[ENA]
¡û
>W1710081796
BDGJ01000168
Bacillota
Calderihabitans maritimus [BDGJ]
87842
87916
+
Gly
CCC
[ENA]
¡û
>W1710727336
LFSN01000029
Bacillota
Clostridia bacterium DTU030 [LFSN]
33492
33566
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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