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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.654699 (115 seq.)
>W1710891766
LNDA01000046
Actinomycetota
Nocardia jinanensis NBRC 108249 [LNDA]
50574
50648
+
Thr
TGT
[ENA]
¡û
>W1710995008
LPZO01000061
Actinomycetota
Rhodococcus kroppenstedtii [LPZO]
31480
31554
+
Thr
TGT
[ENA]
¡û
>W1711004476
LQIU01000004
Actinomycetota
Mycobacterium sp. IS-1496 [LQIU]
43818
43744
-
Thr
TGT
[ENA]
¡û
>W1711004517
LQIV01000001
Actinomycetota
Mycobacterium sp. IS-1742 [LQIV]
90206
90280
+
Thr
TGT
[ENA]
¡û
>W1711006510
LQOK01000044
Actinomycetota
Mycobacterium bohemicum [LQOK]
221090
221164
+
Thr
TGT
[ENA]
¡û
>W1711006813
LQOQ01000030
Actinomycetota
Mycolicibacterium confluentis [LQOQ]
68709
68783
+
Thr
TGT
[ENA]
¡û
>W1711050395
LRRM01000007
Actinomycetota
Nocardia brasiliensis [LRRM]
81284
81358
+
Thr
TGT
[ENA]
¡û
>W1711178446
LWGR01000021
Actinomycetota
Nocardia terpenica [LWGR]
983971
984045
+
Thr
TGT
[ENA]
¡û
>W1711276124
LZHW01000090
Actinomycetota
Mycobacterium sp. ACS4331 [LZHW]
27721
27647
-
Thr
TGT
[ENA]
¡û
>W1711739113
MUBO01000273
Actinomycetota
Streptomyces daghestanicus [MUBO]
1018
944
-
Thr
TGT
[ENA]
¡û
>W1711773333
MVID01000002
Actinomycetota
Mycolicibacterium parafortuitum [MVID]
193010
193084
+
Thr
TGT
[ENA]
¡û
>PL171001824
LN868939
Actinobacteria
Nocardia farcinica NCTC11134 plasmid:2
184070
183996
-
Thr
TGT
[ENA]
¡û
>C171095469
CP019572
Actinomycetota
Rhodococcus sp. MTM3W5.2 [CP019572]
4905078
4905004
-
Thr
TGT
-
¡û
>C014817
AP006618
Actinomycetota
Nocardia farcinica IFM 10152 [AP006618]
567211
567282
+
Thr
TGT
[Ensembl]
¡û
>WENV180031974
FTJU01002239
[FTJU] metagenome; soil
4697
4771
+
Thr
TGT
[ENA]
¢þ
>WENV180032349
FTJZ01000596
[FTJZ] metagenome; soil
89
15
-
Thr
TGT
[ENA]
¢þ
>WENV180095934
MTBK01099072
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
14047
14121
+
Thr
TGT
[ENA]
¢þ
>WENV180096159
MTBK01113607
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
29
103
+
Thr
TGT
[ENA]
¢þ
>WENV180097753
MTBK01209252
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
111110
111183
+
Thr
TGT
[ENA]
¢þ
>WENV181371611
OFQV01025292
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
430
502
+
Thr
TGT
[ENA]
¢þ
>W141231430
BAUA01000114
Actinomycetota
Nocardia brasiliensis IFM 10847 [BAUA]
76732
76658
-
Thr
TGT
[ENA]
¡û
>C181057496
CP022088
Actinomycetota
Nocardia brasiliensis FDAARGOS_352 [CP022088]
5888204
5888130
-
Thr
TGT
-
¡û
>C181090262
CP023778
Actinomycetota
Nocardia terpenica NC_YFY_NT001 [CP023778]
761302
761376
+
Thr
TGT
-
¡û
>C181200315
CP031418
Actinomycetota
Nocardia farcinica W6977 [CP031418]
3157708
3157636
-
Thr
TGT
-
¡û
>C191065467
CP029710
Actinomycetota
Nocardia sp. CS682 [CP029710]
5269963
5270036
+
Thr
TGT
-
¡û
>C191139060
CP035319
Actinomycetota
Rhodococcus sp. ABRD24 [CP035319]
3531284
3531356
+
Thr
TGT
-
¡û
>C191219082
LR215973
Actinomycetota
Nocardia cyriacigeorgica 3012STDY6756504 [LR215973]
5338392
5338464
+
Thr
TGT
-
¡û
>W141702553
JMLO01000008
Actinomycetota
Rhodococcus sp. UNC363MFTsu5.1 [JMLO]
117453
117379
-
Thr
TGT
[ENA]
¡û
>W141759272
JNZF01000004
Actinomycetota
Nocardia carnea carneus [JNZF]
547388
547462
+
Thr
TGT
[ENA]
¡û
>W141760922
JOAJ01000005
Actinomycetota
Nocardia rhamnosiphila [JOAJ]
91556
91482
-
Thr
TGT
[ENA]
¡û
>W141767037
JOEJ01000005
Actinomycetota
Nocardia rhamnosiphila [JOEJ]
599902
599976
+
Thr
TGT
[ENA]
¡û
>W141806998
JPOC01000010
Actinomycetota
Prescottella defluvii [JPOC]
51014
51088
+
Thr
TGT
[ENA]
¡û
>W1910370981
FUFA01000004
Actinomycetota
Mycobacterium rhizamassiliense AB57 [FUFA]
482832
482758
-
Thr
TGT
[ENA]
¡û
>W1910433902
FVWC01000146
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 537 [FVWC]
90
162
+
Thr
TGT
[ENA]
¡û
>W1910472005
FXEG02000005
Actinomycetota
Mycobacterium ahvazicum AFP003 [FXEG]
688123
688199
+
Thr
TGT
[ENA]
¡û
>W1911385749
NVQF01000002
Actinomycetota
Mycolicibacterium palauense CECT 8779 [NVQF]
72608
72534
-
Thr
TGT
[ENA]
¡û
>W1911422426
NXEG01000008
Actinomycetota
Nocardia farcinica CNM20091955 [NXEG]
155721
155649
-
Thr
TGT
[ENA]
¡û
>W1911422488
NXEH01000015
Actinomycetota
Nocardia farcinica CNM20080921 [NXEH]
55959
56031
+
Thr
TGT
[ENA]
¡û
>W1911492037
OBDL01000009
Actinomycetota
Rhodococcus sp. OK270 [OBDL]
116994
117068
+
Thr
TGT
[ENA]
¡û
>W1911493052
OBEG01000007
Actinomycetota
Nocardia amikacinitolerans DSM 45537 [OBEG]
300375
300447
+
Thr
TGT
[ENA]
¡û
>W1911532656
OIFR01000004
Actinomycetota
Nocardia suismassiliense S-137 [OIFR]
257178
257251
+
Thr
TGT
[ENA]
¡û
>W1911573016
PDDW01000001
Actinomycetota
Nocardia sp. FDAARGOS_372 [PDDW]
5265641
5265713
+
Thr
TGT
[ENA]
¡û
>W1911814621
QZFU01000012
Actinomycetota
Nocardia panacis YIM PH 21724 [QZFU]
36171
36244
+
Thr
TGT
[ENA]
¡û
>W1810006104
BFCH01000002
Actinomycetota
Mycobacterium montefiorense BS [BFCH]
398493
398420
-
Thr
TGT
[ENA]
¡û
>W1810173183
PJMW01000002
Actinomycetota
Nocardia fluminea DSM 44489 [PJMW]
1111549
1111477
-
Thr
TGT
[ENA]
¡û
>W1810477670
QAOZ01000009
Actinomycetota
Rhodococcus sp. OK611 [QAOZ]
116994
117068
+
Thr
TGT
[ENA]
¡û
>W1810532512
QCYJ01000084
Actinomycetota
Nocardia aurea SYSU K10002 [QCYJ]
213336
213409
+
Thr
TGT
[ENA]
¡û
>W1810659620
QJKF01000003
Actinomycetota
Nocardia tenerifensis DSM 44704 [QJKF]
775029
774957
-
Thr
TGT
[ENA]
¡û
>W1510544517
CSTD01000002
Actinomycetota
Mycobacterium bohemicum DSM 44277 [CSTD]
540253
540179
-
Thr
TGT
[ENA]
¡û
>W1510562467
CTEE01000001
Actinomycetota
Mycobacterium lentiflavum CSUR P1491 [CTEE]
5533878
5533950
+
Thr
TGT
[ENA]
¡û
>W1511221596
JNFP01000065
Actinomycetota
Nocardia vulneris W9851 [JNFP]
19195
19121
-
Thr
TGT
[ENA]
¡û
>C161084594
CP015219
Actinomycetota
Rhodococcus sp. PBTS 1 [CP015219]
3238831
3238757
-
Thr
TGT
[Ensembl]
¡û
>W121055541
AIHV01000011
Actinomycetota
Nocardia brasiliensis ATCC 700358 [AIHV]
81285
81359
+
Thr
TGT
[ENA]
¡û
>W121125068
BAFT01000006
Actinomycetota
Nocardia brasiliensis NBRC 14402 [BAFT]
108191
108265
+
Thr
TGT
[ENA]
¡û
>W121125165
BAFV01000007
Actinomycetota
Nocardia carnea NBRC 14403 [BAFV]
162206
162280
+
Thr
TGT
[ENA]
¡û
>W121125323
BAFY01000031
Actinomycetota
Nocardia cyriacigeorgica NBRC 100375 [BAFY]
88804
88878
+
Thr
TGT
[ENA]
¡û
>W121125422
BAGA01000017
Actinomycetota
Nocardia higoensis NBRC 100133 [BAGA]
32672
32746
+
Thr
TGT
[ENA]
¡û
>W121125470
BAGB01000009
Actinomycetota
Nocardia jiangxiensis NBRC 101359 [BAGB]
99358
99432
+
Thr
TGT
[ENA]
¡û
>W121125647
BAGE01000009
Actinomycetota
Nocardia paucivorans NBRC 100373 [BAGE]
1206
1134
-
Thr
TGT
[ENA]
¡û
>W121125742
BAGG01000011
Actinomycetota
Nocardia takedensis NBRC 100417 [BAGG]
21394
21466
+
Thr
TGT
[ENA]
¡û
>W121125790
BAGH01000036
Actinomycetota
Nocardia tenerifensis NBRC 101015 [BAGH]
15088
15162
+
Thr
TGT
[ENA]
¡û
>W121125842
BAGI01000251
Actinomycetota
Nocardia terpenica NBRC 100888 [BAGI]
885
959
+
Thr
TGT
[ENA]
¡û
>W1610068700
BCRN01000012
Actinomycetota
Millisia brevis NBRC 105863 [BCRN]
64063
63989
-
Thr
TGT
[ENA]
¡û
>W1610069122
BCRV01000020
Actinomycetota
Skermania piniformis NBRC 15059 [BCRV]
27910
27836
-
Thr
TGT
[ENA]
¡û
>W1610078322
BDAU01000047
Actinomycetota
Nocardia amikacinitolerans NBRC 108937 [BDAU]
28998
29070
+
Thr
TGT
[ENA]
¡û
>W1610078540
BDAY01000123
Actinomycetota
Nocardia altamirensis NBRC 108246 [BDAY]
8658
8732
+
Thr
TGT
[ENA]
¡û
>W1610078949
BDBH01000001
Actinomycetota
Nocardia harenae NBRC 108248 [BDBH]
636851
636779
-
Thr
TGT
[ENA]
¡û
>W1610079075
BDBJ01000083
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
18688
18614
-
Thr
TGT
[ENA]
¡û
>W1610079132
BDBK01000007
Actinomycetota
Nocardia inohanensis NBRC 100128 [BDBK]
132114
132042
-
Thr
TGT
[ENA]
¡û
>W1610079320
BDBO01000026
Actinomycetota
Nocardia jinanensis NBRC 108249 [BDBO]
3534
3608
+
Thr
TGT
[ENA]
¡û
>W1610079392
BDBP01000060
Actinomycetota
Nocardia lijiangensis NBRC 108240 [BDBP]
200
128
-
Thr
TGT
[ENA]
¡û
>W1610079434
BDBQ01000043
Actinomycetota
Nocardia miyunensis NBRC 108239 [BDBQ]
55269
55195
-
Thr
TGT
[ENA]
¡û
>W1610079583
BDBT01000009
Actinomycetota
Nocardia shimofusensis NBRC 100134 [BDBT]
226795
226869
+
Thr
TGT
[ENA]
¡û
>W1610079927
BDBZ01000033
Actinomycetota
Nocardia speluncae NBRC 108251 [BDBZ]
19946
20020
+
Thr
TGT
[ENA]
¡û
>W1610080055
BDCC01000010
Actinomycetota
Nocardia vaccinii NBRC 15922 [BDCC]
63993
63919
-
Thr
TGT
[ENA]
¡û
>W1610080228
BDCF01000006
Actinomycetota
Nocardia xishanensis NBRC 101358 [BDCF]
210778
210850
+
Thr
TGT
[ENA]
¡û
>W1610080410
BDCI01000023
Actinomycetota
Nocardia vulneris [BDCI]
127328
127402
+
Thr
TGT
[ENA]
¡û
>W1610080571
BDCL01000059
Actinomycetota
Nocardia rhamnosiphila NBRC 108938 [BDCL]
99064
98990
-
Thr
TGT
[ENA]
¡û
>W1610080846
BDCT01000015
Actinomycetota
Nocardia arizonensis [BDCT]
40811
40737
-
Thr
TGT
[ENA]
¡û
>W1610080875
BDCU01000004
Actinomycetota
Nocardia fusca NBRC 14340 [BDCU]
14293
14367
+
Thr
TGT
[ENA]
¡û
>C131008836
CP003876
Actinomycetota
Nocardia brasiliensis ATCC 700358 HUJEG-1 [CP003876]
671090
671164
+
Thr
TGT
[Ensembl]
¡û
>W1610617958
LGYZ01000129
Actinomycetota
Nocardia arizonensis [LGYZ]
178954
178880
-
Thr
TGT
[ENA]
¡û
>W1610752131
LNDA01000046
Actinomycetota
Nocardia jinanensis NBRC 108249 [LNDA]
50574
50648
+
Thr
TGT
[ENA]
¡û
>W1610849665
LPZO01000061
Actinomycetota
Rhodococcus kroppenstedtii [LPZO]
31480
31554
+
Thr
TGT
[ENA]
¡û
>W1610855070
LQIU01000004
Actinomycetota
Mycobacterium sp. IS-1496 [LQIU]
43818
43744
-
Thr
TGT
[ENA]
¡û
>W1610855111
LQIV01000001
Actinomycetota
Mycobacterium sp. IS-1742 [LQIV]
90206
90280
+
Thr
TGT
[ENA]
¡û
>W1610891524
LRRM01000007
Actinomycetota
Nocardia brasiliensis [LRRM]
81284
81358
+
Thr
TGT
[ENA]
¡û
>W1610986493
LWGR01000021
Actinomycetota
Nocardia terpenica [LWGR]
983971
984045
+
Thr
TGT
[ENA]
¡û
>W1611035409
LZHW01000090
Actinomycetota
Mycobacterium sp. ACS4331 [LZHW]
27721
27647
-
Thr
TGT
[ENA]
¡û
>W1710066073
BCRN01000012
Actinomycetota
Millisia brevis NBRC 105863 [BCRN]
64063
63989
-
Thr
TGT
[ENA]
¡û
>W1710066495
BCRV01000020
Actinomycetota
Skermania piniformis NBRC 15059 [BCRV]
27910
27836
-
Thr
TGT
[ENA]
¡û
>W1710071997
BCXA01000037
Actinomycetota
Rhodococcus maanshanensis NBRC 100610 [BCXA]
55172
55098
-
Thr
TGT
[ENA]
¡û
>W1710072220
BCXF01000001
Actinomycetota
Rhodococcus triatomae NBRC 103116 [BCXF]
334477
334403
-
Thr
TGT
[ENA]
¡û
>W1710076881
BDAU01000047
Actinomycetota
Nocardia amikacinitolerans NBRC 108937 [BDAU]
28998
29070
+
Thr
TGT
[ENA]
¡û
>W1710077099
BDAY01000123
Actinomycetota
Nocardia altamirensis NBRC 108246 [BDAY]
8658
8732
+
Thr
TGT
[ENA]
¡û
>W1710077508
BDBH01000001
Actinomycetota
Nocardia harenae NBRC 108248 [BDBH]
636851
636779
-
Thr
TGT
[ENA]
¡û
>W1710077634
BDBJ01000083
Actinomycetota
Nocardia farcinica NBRC 15532 [BDBJ]
18688
18614
-
Thr
TGT
[ENA]
¡û
>W1710077691
BDBK01000007
Actinomycetota
Nocardia inohanensis NBRC 100128 [BDBK]
132114
132042
-
Thr
TGT
[ENA]
¡û
>W1710077879
BDBO01000026
Actinomycetota
Nocardia jinanensis NBRC 108249 [BDBO]
3534
3608
+
Thr
TGT
[ENA]
¡û
>W1710077951
BDBP01000060
Actinomycetota
Nocardia lijiangensis NBRC 108240 [BDBP]
200
128
-
Thr
TGT
[ENA]
¡û
>W1710077993
BDBQ01000043
Actinomycetota
Nocardia miyunensis NBRC 108239 [BDBQ]
55269
55195
-
Thr
TGT
[ENA]
¡û
>W1710078142
BDBT01000009
Actinomycetota
Nocardia shimofusensis NBRC 100134 [BDBT]
226795
226869
+
Thr
TGT
[ENA]
¡û
>W1710078486
BDBZ01000033
Actinomycetota
Nocardia speluncae NBRC 108251 [BDBZ]
19946
20020
+
Thr
TGT
[ENA]
¡û
>W1710078614
BDCC01000010
Actinomycetota
Nocardia vaccinii NBRC 15922 [BDCC]
63993
63919
-
Thr
TGT
[ENA]
¡û
>W1710078787
BDCF01000006
Actinomycetota
Nocardia xishanensis NBRC 101358 [BDCF]
210778
210850
+
Thr
TGT
[ENA]
¡û
>W1710078969
BDCI01000023
Actinomycetota
Nocardia vulneris [BDCI]
127328
127402
+
Thr
TGT
[ENA]
¡û
>W1710079130
BDCL01000059
Actinomycetota
Nocardia rhamnosiphila NBRC 108938 [BDCL]
99064
98990
-
Thr
TGT
[ENA]
¡û
>W1710079405
BDCT01000015
Actinomycetota
Nocardia arizonensis [BDCT]
40811
40737
-
Thr
TGT
[ENA]
¡û
>W1710079434
BDCU01000004
Actinomycetota
Nocardia fusca NBRC 14340 [BDCU]
14293
14367
+
Thr
TGT
[ENA]
¡û
>W1710505861
FMUB01000002
Actinomycetota
Mycolicibacterium fluoranthenivorans UNC267MFSha1.1M11 [FMUB]
282599
282525
-
Thr
TGT
[ENA]
¡û
>W1710517696
FNDN01000001
Actinomycetota
Rhodococcus triatomae [FNDN]
727623
727549
-
Thr
TGT
[ENA]
¡û
>W1710544528
FOAW01000019
Actinomycetota
Rhodococcus maanshanensis [FOAW]
45947
46021
+
Thr
TGT
[ENA]
¡û
>W1710555513
FOJN01000008
Actinomycetota
Rhodococcus kroppenstedtii [FOJN]
129037
129111
+
Thr
TGT
[ENA]
¡û
>W1710599667
FTOW01000007
Actinomycetota
Nocardia farcinica [FTOW]
75466
75392
-
Thr
TGT
[ENA]
¡û
>W1710744133
LGYZ01000129
Actinomycetota
Nocardia arizonensis [LGYZ]
178954
178880
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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