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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.654732 (108 seq.)
>W1710876699
LMPL01000002
Actinomycetota
Williamsia sp. Leaf354 [LMPL]
419937
419863
-
Val
CAC
[ENA]
¡û
>W1710879241
LMRN01000012
Actinomycetota
Rhodococcus sp. Leaf225 [LMRN]
338318
338246
-
Val
CAC
[ENA]
¡û
>W1710879382
LMRQ01000013
Actinomycetota
Rhodococcus sp. Leaf258 [LMRQ]
340999
340927
-
Val
CAC
[ENA]
¡û
>W1710909524
LNQO01000002
Actinomycetota
Gordonia sp. SGD-V-85 [LNQO]
365263
365337
+
Val
CAC
[ENA]
¡û
>W1711221526
LXRE01000050
Actinomycetota
Gordonia sp. LAM0048 [LXRE]
125420
125494
+
Val
CAC
[ENA]
¡û
>W1711221536
LXRE01000104
Actinomycetota
Gordonia sp. LAM0048 [LXRE]
342
416
+
Val
CAC
[ENA]
¡û
>W1711234513
LYCQ01000268
Actinomycetota
Nocardia farcinica [LYCQ]
543
617
+
Val
CAC
[ENA]
¡û
>W1711281887
LZMO01000020
Actinomycetota
Gordonia sp. 852002-10350_SCH5691597 [LZMO]
7082
7008
-
Val
CAC
[ENA]
¡û
>W1711281966
LZMP01000046
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
9442
9516
+
Val
CAC
[ENA]
¡û
>W1711286487
LZTC01000092
Actinomycetota
Gordonia sp. 852002-50395_SCH5434458 [LZTC]
60064
60138
+
Val
CAC
[ENA]
¡û
>W1711286537
LZTD01000154
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-a [LZTD]
177422
177348
-
Val
CAC
[ENA]
¡û
>W1711286554
LZTE01000034
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-c [LZTE]
328661
328735
+
Val
CAC
[ENA]
¡û
>W1711460578
MJEI01000107
Actinomycetota
Williamsia sp. 1135 [MJEI]
182278
182352
+
Val
CAC
[ENA]
¡û
>W1711460623
MJEJ01000048
Actinomycetota
Williamsia sp. 1138 [MJEJ]
12011
11939
-
Val
CAC
[ENA]
¡û
>W1711492282
MKKG01000022
Actinomycetota
Gordonia sp. CNJ-863 [MKKG]
271985
271913
-
Val
CAC
[ENA]
¡û
>W1711776902
MVKV01000003
Actinomycetota
Gordonia sp. IITR100 [MVKV]
233457
233531
+
Val
CAC
[ENA]
¡û
>W1712061720
NGFO01000041
Actinomycetota
Gordonia lacunae [NGFO]
1667
1741
+
Val
CAC
[ENA]
¡û
>W131109109
APHK01000698
Actinomycetota
Gordonia sp. NB41Y NB4-1Y [APHK]
88
14
-
Val
CAC
[ENA]
¡û
>W131109120
APHK01001142
Actinomycetota
Gordonia sp. NB41Y NB4-1Y [APHK]
694
620
-
Val
CAC
[ENA]
¡û
>W131156533
AQPW01000002
Actinomycetota
Gordonia terrae C-6 [AQPW]
105145
105219
+
Val
CAC
[ENA]
¡û
>W131185126
ARTM01000030
Actinomycetota
Nocardia sp. 348MFTsu5.1 [ARTM]
328025
328099
+
Val
CAC
[ENA]
¡û
>W131215947
ATVK01000048
Actinomycetota
Gordonia hirsuta DSM 44140 = NBRC 16056 [ATVK]
145325
145253
-
Val
CAC
[ENA]
¡û
>W131229909
AUHE01000002
Actinomycetota
Gordonia shandongensis DSM 45094 [AUHE]
186847
186919
+
Val
CAC
[ENA]
¡û
>W131239491
BANS01000017
Actinomycetota
Gordonia amicalis NBRC 100051 [BANS]
157265
157193
-
Val
CAC
[ENA]
¡û
>W131239535
BANT01000018
Actinomycetota
Gordonia hirsuta DSM 44140 = NBRC 16056 [BANT]
145325
145253
-
Val
CAC
[ENA]
¡û
>W131239708
BANX01000019
Actinomycetota
Gordonia soli NBRC 108243 [BANX]
65387
65313
-
Val
CAC
[ENA]
¡û
>W131240852
BAOP01000010
Actinomycetota
Gordonia malaquae NBRC 108250 [BAOP]
169117
169043
-
Val
CAC
[ENA]
¡û
>W141144164
AWTB01000021
Actinomycetota
Gordonia amicalis CCMA-559 [AWTB]
288448
288522
+
Val
CAC
[ENA]
¡û
>W141194601
AYTE01000026
Actinomycetota
Williamsia sp. D3 [AYTE]
267102
267030
-
Val
CAC
[ENA]
¡û
>W141200048
AYXO01000023
Actinomycetota
Gordonia alkanivorans CGMCC 6845 [AYXO]
26763
26835
+
Val
CAC
[ENA]
¡û
>W141256025
CBVP010000071
Actinomycetota
Gordonia alkanivorans s104 [CBVP]
19359
19431
+
Val
CAC
[ENA]
¡û
>W09109094
ABTV01000014
Actinomycetota
Gordonia bronchialis DSM 43247 [ABTV]
113981
114055
+
Val
CAC
[ENA]
¡û
>C181153070
CP027433
Actinomycetota
Gordonia iterans Co17 [CP027433]
2167698
2167625
-
Val
CAC
-
¡û
>C181181621
CP029604
Actinomycetota
Gordonia terrae NRRL B-16283 [CP029604]
2588474
2588547
+
Val
CAC
-
¡û
>C181215438
LS483468
Actinomycetota
Rhodococcus coprophilus NCTC10994 [LS483468]
825875
825803
-
Val
CAC
-
¡û
>C191020800
CP022580
Actinomycetota
Gordonia rubripertincta CWB2 [CP022580]
3053495
3053422
-
Val
CAC
-
¡û
>C191050798
CP027114
Actinomycetota
Gordonia alkanivorans YC-RL2 [CP027114]
3112777
3112849
+
Val
CAC
-
¡û
>C191117129
CP033972
Actinomycetota
Gordonia insulae MMS17-SY073 [CP033972]
834076
834150
+
Val
CAC
-
¡û
>W141702677
JMLQ01000003
Actinomycetota
Rhodococcus sp. UNC23MFCrub1.1 [JMLQ]
281057
281129
+
Val
CAC
[ENA]
¡û
>W141756185
JNXA01000001
Actinomycetota
Gordonia terrae [JNXA]
247126
247052
-
Val
CAC
[ENA]
¡û
>W141758750
JNYV01000001
Actinomycetota
Kitasatospora arboriphila [JNYV]
462640
462568
-
Val
CAC
[ENA]
¡û
>W141760698
JOAF01000001
Actinomycetota
Microbispora sp. NRRL B-24597 [JOAF]
462640
462568
-
Val
CAC
[ENA]
¡û
>W141807031
JPOC01000088
Actinomycetota
Prescottella defluvii [JPOC]
4213
4141
-
Val
CAC
[ENA]
¡û
>W1910129234
BHYM01000037
Actinomycetota
Rhodococcus wratislaviensis C31-06 [BHYM]
365639
365711
+
Val
CAC
[ENA]
¡û
>W1910424379
FVPM01000180
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 1064 [FVPM]
5330
5258
-
Val
CAC
[ENA]
¡û
>W1910910640
NHML01000003
Actinomycetota
Rhodococcus sp. NCIMB 12038 [NHML]
376301
376373
+
Val
CAC
[ENA]
¡û
>W1911155390
NPJZ01000001
Actinomycetota
Rhodococcus sp. OK302 [NPJZ]
3643137
3643209
+
Val
CAC
[ENA]
¡û
>W1911239705
NSDZ01000001
Actinomycetota
Rhodococcus sp. ACS1 [NSDZ]
614313
614240
-
Val
CAC
[ENA]
¡û
>W1810069234
PEBD01000012
Actinomycetota
Williamsia marianensis BULT 1.1 [PEBD]
343392
343464
+
Val
CAC
[ENA]
¡û
>W1810477533
QAOW01000005
Actinomycetota
Rhodococcus sp. OK519 [QAOW]
339883
339955
+
Val
CAC
[ENA]
¡û
>W1810577773
QEOM01000002
Actinomycetota
Williamsia marianensis DSM 44944 [QEOM]
516237
516165
-
Val
CAC
[ENA]
¡û
>W1810658270
QJJF01000002
Actinomycetota
Williamsia faeni DSM 45372 [QJJF]
317903
317975
+
Val
CAC
[ENA]
¡û
>W1810671171
QJSP01000001
Actinomycetota
Williamsia limnetica DSM 45521 [QJSP]
512776
512704
-
Val
CAC
[ENA]
¡û
>W1810763006
QQAT01000029
Actinomycetota
Rhodococcus sp. AG1013 [QQAT]
12553
12481
-
Val
CAC
[ENA]
¡û
>SRA1015195
SRR023845.495916
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
197
125
-
Val
CAC
[SRA]
>SRA1015320
SRR023846.15388
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
174
102
-
Val
CAC
[SRA]
>C10107069
CP001802
Actinomycetota
Gordonia bronchialis DSM 43247 [CP001802]
2416880
2416954
+
Val
CAC
[Ensembl]
¡û
>W1511518894
JXYP01000018
Actinomycetota
Williamsia herbipolensis ARP1 [JXYP]
144919
144993
+
Val
CAC
[ENA]
¡û
>W1511640277
LDTZ01000013
Actinomycetota
Gordonia jacobaea mv1 [LDTZ]
301072
301146
+
Val
CAC
[ENA]
¡û
>W11184658
BACI01000014
Actinomycetota
Gordonia alkanivorans NBRC 16433 [BACI]
60750
60678
-
Val
CAC
[ENA]
¡û
>C161037615
CP011853
Actinomycetota
Gordonia phthalatica QH-11 [CP011853]
2022538
2022612
+
Val
CAC
[Ensembl]
¡û
>C161100045
CP016594
Actinomycetota
Gordonia terrae 3612 [CP016594]
2587223
2587297
+
Val
CAC
-
¡û
>W1610048648
BBEG01000072
Actinomycetota
Rhodococcus sp. JCM 9791 [BBEG]
11142
11070
-
Val
CAC
[ENA]
¡û
>W1610048691
BBEH01000046
Actinomycetota
Rhodococcus sp. JCM 9793 [BBEH]
8151
8223
+
Val
CAC
[ENA]
¡û
>W1610049339
BBEW01000036
Actinomycetota
Rhodococcus sp. HA99 [BBEW]
4077
4149
+
Val
CAC
[ENA]
¡û
>W1610050799
BBGF01000848
Actinomycetota
Rhodococcus koreensis JCM 10743 = NBRC 100607 [BBGF]
392
318
-
Val
CAC
[ENA]
¡û
>W1610051022
BBGK01000124
Actinomycetota
Gordonia amicalis NBRC 100051 = JCM 11271 [BBGK]
1594
1666
+
Val
CAC
[ENA]
¡û
>W1610051105
BBGN01000205
Actinomycetota
Gordonia westfalica JCM 11757 [BBGN]
2363
2435
+
Val
CAC
[ENA]
¡û
>W1610062140
BCNF01000039
Actinomycetota
Gordonia desulfuricans NBRC 100010 [BCNF]
51296
51222
-
Val
CAC
[ENA]
¡û
>W1610074584
BCWU01000006
Actinomycetota
Gordonia hydrophobica NBRC 16057 [BCWU]
64570
64496
-
Val
CAC
[ENA]
¡û
>W1610078028
BDAP01000003
Actinomycetota
Williamsia muralis NBRC 105860 [BDAP]
291016
291088
+
Val
CAC
[ENA]
¡û
>W121124311
BAFC01000005
Actinomycetota
Gordonia sputi NBRC 100414 [BAFC]
45010
45084
+
Val
CAC
[ENA]
¡û
>W121124360
BAFD01000006
Actinomycetota
Gordonia terrae NBRC 100016 [BAFD]
41216
41142
-
Val
CAC
[ENA]
¡û
>W121126538
BAHB01000053
Actinomycetota
Gordonia rubripertincta NBRC 101908 [BAHB]
66994
66920
-
Val
CAC
[ENA]
¡û
>W121126682
BAHE01000014
Actinomycetota
Gordonia namibiensis NBRC 108229 [BAHE]
26430
26356
-
Val
CAC
[ENA]
¡û
>C131001578
CP002907
Actinomycetota
Gordonia sp. KTR9 [CP002907]
2500405
2500479
+
Val
CAC
[Ensembl]
¡û
>W1610515292
FMAX01000002
Actinomycetota
Gordonia sp. v-85 [FMAX]
365263
365337
+
Val
CAC
[ENA]
¡û
>W1610638744
LIYC01000002
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
240078
240004
-
Val
CAC
[ENA]
¡û
>W1610739045
LMPL01000002
Actinomycetota
Williamsia sp. Leaf354 [LMPL]
419937
419863
-
Val
CAC
[ENA]
¡û
>W1610741587
LMRN01000012
Actinomycetota
Rhodococcus sp. Leaf225 [LMRN]
338318
338246
-
Val
CAC
[ENA]
¡û
>W1610741728
LMRQ01000013
Actinomycetota
Rhodococcus sp. Leaf258 [LMRQ]
340999
340927
-
Val
CAC
[ENA]
¡û
>W1610767883
LNQO01000002
Actinomycetota
Gordonia sp. SGD-V-85 [LNQO]
365263
365337
+
Val
CAC
[ENA]
¡û
>W1611006044
LXRE01000050
Actinomycetota
Gordonia sp. LAM0048 [LXRE]
125420
125494
+
Val
CAC
[ENA]
¡û
>W1611006054
LXRE01000104
Actinomycetota
Gordonia sp. LAM0048 [LXRE]
342
416
+
Val
CAC
[ENA]
¡û
>W1611041172
LZMO01000020
Actinomycetota
Gordonia sp. 852002-10350_SCH5691597 [LZMO]
7082
7008
-
Val
CAC
[ENA]
¡û
>W1611041251
LZMP01000046
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
9442
9516
+
Val
CAC
[ENA]
¡û
>W1611044048
LZTC01000092
Actinomycetota
Gordonia sp. 852002-50395_SCH5434458 [LZTC]
60064
60138
+
Val
CAC
[ENA]
¡û
>W1611044098
LZTD01000154
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-a [LZTD]
177422
177348
-
Val
CAC
[ENA]
¡û
>W1611044115
LZTE01000034
Actinomycetota
Gordonia sp. 852002-50816_SCH5313054-c [LZTE]
328661
328735
+
Val
CAC
[ENA]
¡û
>W1710045120
BBEG01000072
Actinomycetota
Rhodococcus sp. JCM 9791 [BBEG]
11142
11070
-
Val
CAC
[ENA]
¡û
>W1710045163
BBEH01000046
Actinomycetota
Rhodococcus sp. JCM 9793 [BBEH]
8151
8223
+
Val
CAC
[ENA]
¡û
>W1710045738
BBEW01000036
Actinomycetota
Rhodococcus sp. HA99 [BBEW]
4077
4149
+
Val
CAC
[ENA]
¡û
>W1710047198
BBGF01000848
Actinomycetota
Rhodococcus koreensis JCM 10743 = NBRC 100607 [BBGF]
392
318
-
Val
CAC
[ENA]
¡û
>W1710047421
BBGK01000124
Actinomycetota
Gordonia amicalis NBRC 100051 = JCM 11271 [BBGK]
1594
1666
+
Val
CAC
[ENA]
¡û
>W1710047504
BBGN01000205
Actinomycetota
Gordonia westfalica JCM 11757 [BBGN]
2363
2435
+
Val
CAC
[ENA]
¡û
>W1710059681
BCNF01000039
Actinomycetota
Gordonia desulfuricans NBRC 100010 [BCNF]
51296
51222
-
Val
CAC
[ENA]
¡û
>W1710071702
BCWU01000006
Actinomycetota
Gordonia hydrophobica NBRC 16057 [BCWU]
64570
64496
-
Val
CAC
[ENA]
¡û
>W1710071942
BCWZ01000022
Actinomycetota
Rhodococcus koreensis JCM 10743 = NBRC 100607 [BCWZ]
221963
221889
-
Val
CAC
[ENA]
¡û
>W1710072055
BCXB01000030
Actinomycetota
Rhodococcus marinonascens NBRC 14363 [BCXB]
22766
22840
+
Val
CAC
[ENA]
¡û
>W1710072282
BCXG01000005
Actinomycetota
Rhodococcus tukisamuensis NBRC 100609 [BCXG]
94495
94421
-
Val
CAC
[ENA]
¡û
>W1710076492
BDAM01000001
Actinomycetota
Rhodococcus coprophilus NBRC 100603 [BDAM]
524110
524038
-
Val
CAC
[ENA]
¡û
>W1710076587
BDAP01000003
Actinomycetota
Williamsia muralis NBRC 105860 [BDAP]
291016
291088
+
Val
CAC
[ENA]
¡û
>W1710500982
FMAX01000002
Actinomycetota
Gordonia sp. v-85 [FMAX]
365263
365337
+
Val
CAC
[ENA]
¡û
>W1710513335
FNAB01000002
Actinomycetota
Rhodococcus tukisamuensis [FNAB]
180472
180398
-
Val
CAC
[ENA]
¡û
>W1710527925
FNLM01000034
Actinomycetota
Gordonia westfalica [FNLM]
663958
663886
-
Val
CAC
[ENA]
¡û
>W1710534602
FNRZ01000003
Actinomycetota
Gordonia malaquae [FNRZ]
2049293
2049367
+
Val
CAC
[ENA]
¡û
>W1710535898
FNSV01000005
Actinomycetota
Rhodococcus koreensis [FNSV]
1177806
1177732
-
Val
CAC
[ENA]
¡û
>W1710774575
LIYC01000002
Actinomycetota
Gordonia sp. HS-NH1 [LIYC]
240078
240004
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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