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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.65474 (22 seq.)
>W1711078543
LSMZ01000037
Bacillota
Clostridium sp. link-BC1 [LSMZ]
5433
5347
-
Leu
CAG
[ENA]
¡û
>W1711222570
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
515500
515414
-
Leu
CAG
[ENA]
¡û
>C007119
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
1247191
1247277
+
Leu
CAG
[Ensembl]
¡û
>W141067332
ASAA01000004
Bacillota
Acetivibrio clariflavus 4-2a [ASAA]
143112
143026
-
Leu
CAG
[ENA]
¡û
>W08011406
ABVG01000078
Bacillota
Acetivibrio thermocellus DSM 4150 [ABVG]
3366
3452
+
Leu
CAG
[ENA]
¡û
>W141233368
BAVR01000007
Bacillota
Acetivibrio straminisolvens JCM 21531 [BAVR]
5088
5002
-
Leu
CAG
[ENA]
¡û
>W141251479
CBQO010000028
Bacillota
Acetivibrio thermocellus BC1 [CBQO]
43929
44015
+
Leu
CAG
[ENA]
¡û
>WENV170684025
LFRM01015448
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
25525
25439
-
Leu
CAG
[ENA]
¢þ
>W09100441
AABG04000005
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
3438
3524
+
Leu
CAG
[ENA]
¡û
>W09135642
ACVX01000002
Bacillota
Acetivibrio thermocellus DSM 2360 [ACVX]
85257
85343
+
Leu
CAG
[ENA]
¡û
>W1911496641
OCMV01000002
Bacillota
Acetivibrio thermocellus LQRI [OCMV]
2633278
2633364
+
Leu
CAG
[ENA]
¡û
>W1911572353
PDBW01000001
Bacillota
Acetivibrio thermocellus AD2 [PDBW]
1396293
1396207
-
Leu
CAG
[ENA]
¡û
>W10126183
AEDB01000059
Bacillota
Acetivibrio cellulolyticus CD2 [AEDB]
13334
13420
+
Leu
CAG
[ENA]
¡û
>C11106505
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
1392644
1392558
-
Leu
CAG
[Ensembl]
¡û
>W11133444
AEDB01000059
Bacillota
Acetivibrio cellulolyticus CD2 [AEDB]
13334
13420
+
Leu
CAG
[ENA]
¡û
>C121005078
CP003065
Bacillota
Acetivibrio clariflavus DSM 19732 [CP003065]
1915871
1915785
-
Leu
CAG
[Ensembl]
¡û
>C161060814
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
1396293
1396207
-
Leu
CAG
-
¡û
>C161097566
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
1396765
1396679
-
Leu
CAG
-
¡û
>W121061332
AJGS01000087
Bacillota
Acetivibrio thermocellus AD2 [AJGS]
85286
85372
+
Leu
CAG
[ENA]
¡û
>W121061345
AJGT01000008
Bacillota
Acetivibrio thermocellus YS [AJGT]
72459
72373
-
Leu
CAG
[ENA]
¡û
>W1610605571
LFSC01000002
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
25525
25439
-
Leu
CAG
[ENA]
¡û
>W1710726858
LFSC01000002
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
25525
25439
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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