This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.654774 (23 seq.)
>W1711422974
MICC01000080
Campylobacterota
Sulfurimonas sp. RIFOXYB12_FULL_35_9 [MICC]
1193
1119
-
Asn
GTT
[ENA]
¡û
>W1711422993
MICD01000252
Campylobacterota
Sulfurimonas sp. RIFOXYB2_FULL_37_5 [MICD]
1097
1171
+
Asn
GTT
[ENA]
¡û
>W1711423047
MICG01000232
Campylobacterota
Sulfurimonas sp. RIFOXYD12_FULL_36_11 [MICG]
1436
1510
+
Asn
GTT
[ENA]
¡û
>C171057191
CP017111
Campylobacterota
Sulfurospirillum halorespirans DSM 13726 DSM 13726; PCE-M2 [CP017111]
405727
405801
+
Asn
GTT
-
¡û
>C171118596
CP021416
Campylobacterota
Sulfurospirillum sp. SL2-1 [CP021416]
350807
350881
+
Asn
GTT
-
¡û
>WENV180209338
OBAK01073993
[OBAK] marine metagenome; ENVO.00002150
88
14
-
Asn
GTT
[ENA]
¢þ
>WENV180287136
OBIK01000004
[OBIK] hydrothermal vent metagenome; sea water
29969
29895
-
Asn
GTT
[ENA]
¢þ
>WENV180287137
OBIK01000004
[OBIK] hydrothermal vent metagenome; sea water
29854
29780
-
Asn
GTT
[ENA]
¢þ
>WENV170575521
FPHC01000028
[FPHC] hydrothermal vent metagenome genome assembly, contig: NODE_46.; water
26248
26322
+
Asn
GTT
[ENA]
¢þ
>WENV170575769
FPHM01000295
[FPHM] hydrothermal vent metagenome genome assembly, contig: NODE_32.; water
12624
12698
+
Asn
GTT
[ENA]
¢þ
>C181078319
CP023275
Campylobacterota
Sulfurospirillum diekertiae JPD-1 [CP023275]
347753
347827
+
Asn
GTT
-
¡û
>W09110080
ABUV01000001
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [ABUV]
443667
443741
+
Asn
GTT
[ENA]
¡û
>W141814462
JQGK01000022
Campylobacterota
Sulfurospirillum sp. SCADC [JQGK]
1883
1809
-
Asn
GTT
[ENA]
¡û
>W141814490
JQGL01000061
Campylobacterota
Sulfuricurvum sp. MLSB [JQGL]
5634
5560
-
Asn
GTT
[ENA]
¡û
>C151018367
CP007201
Campylobacterota
Sulfurospirillum multivorans DSM 12446 [CP007201]
390855
390929
+
Asn
GTT
[Ensembl]
¡û
>C10111343
CP001816
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [CP001816]
297952
297878
-
Asn
GTT
[Ensembl]
¡û
>W1511327850
JQIQ01000031
Campylobacterota
Sulfurovum sp. PC08-66 [JQIQ]
23351
23425
+
Asn
GTT
[ENA]
¡û
>W1511327851
JQIQ01000031
Campylobacterota
Sulfurovum sp. PC08-66 [JQIQ]
23449
23523
+
Asn
GTT
[ENA]
¡û
>W1511327904
JQIR01000112
Campylobacterota
Sulfurovum sp. FS06-10 [JQIR]
10042
10116
+
Asn
GTT
[ENA]
¡û
>W1511327925
JQIS01000051
Campylobacterota
Sulfurovum sp. FS08-3 [JQIS]
9545
9471
-
Asn
GTT
[ENA]
¡û
>W1511327926
JQIS01000051
Campylobacterota
Sulfurovum sp. FS08-3 [JQIS]
9445
9371
-
Asn
GTT
[ENA]
¡û
>C121011156
CP003333
Campylobacterota
Sulfurospirillum barnesii SES-3 [CP003333]
322018
322092
+
Asn
GTT
[Ensembl]
¡û
>C161001351
AP014723
Campylobacterota
Sulfurospirillum sp. UCH001 [AP014723]
375239
375313
+
Asn
GTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK