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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.654861 (5 seq.)
>WENV180248217
OBEQ010093446
[OBEQ] groundwater metagenome; groundwater
596
671
+
Asn
GTT
[ENA]
¡û
>WENV180251326
OBEQ010358513
[OBEQ] groundwater metagenome; groundwater
65
139
+
Asn
GTT
[ENA]
¡û
>WENV180260765
OBEQ011229757
[OBEQ] groundwater metagenome; groundwater
308
382
+
Asn
GTT
[ENA]
¡û
>WENV180261049
OBEQ011255320
[OBEQ] groundwater metagenome; groundwater
504
578
+
Asn
GTT
[ENA]
¡û
>WENV180263746
OBEQ011502768
[OBEQ] groundwater metagenome; groundwater
932
1007
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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