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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655042 (49 seq.)
>W1710869688
LMJX01000002
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
757199
757125
-
Gln
CTG
[ENA]
¡û
>W1710869904
LMKB01000007
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
107818
107744
-
Gln
CTG
[ENA]
¡û
>W1710871364
LMLG01000005
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
2576
2650
+
Gln
CTG
[ENA]
¡û
>W1710872757
LMMF01000002
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
215772
215698
-
Gln
CTG
[ENA]
¡û
>W1710873129
LMMO01000001
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
599138
599210
+
Gln
CTG
[ENA]
¡û
>W1710874710
LMNV01000003
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
647824
647750
-
Gln
CTG
[ENA]
¡û
>W1710875023
LMOB01000001
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
806425
806351
-
Gln
CTG
[ENA]
¡û
>W1710876042
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
2811
2885
+
Gln
CTG
[ENA]
¡û
>W1710876204
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
757246
757172
-
Gln
CTG
[ENA]
¡û
>W1710876261
LMPB01000003
Actinomycetota
Frigoribacterium sp. Leaf172 [LMPB]
2625
2697
+
Gln
CTG
[ENA]
¡û
>W1710876909
LMPQ01000011
Actinomycetota
Frigoribacterium sp. Leaf186 [LMPQ]
2640
2714
+
Gln
CTG
[ENA]
¡û
>W1710878139
LMQR01000002
Actinomycetota
Frigoribacterium sp. Leaf415 [LMQR]
216183
216109
-
Gln
CTG
[ENA]
¡û
>W1711173311
LWCT01000035
Actinomycetota
Plantibacter sp. H53 [LWCT]
132539
132613
+
Gln
CTG
[ENA]
¡û
>W1711461353
MJGS01000008
Actinomycetota
Frigoribacterium sp. MCBA15_019 [MJGS]
18420
18346
-
Gln
CTG
[ENA]
¡û
>W1711461544
MJGW01000017
Actinomycetota
Plantibacter sp. MMLR14_011 [MJGW]
235970
235896
-
Gln
CTG
[ENA]
¡û
>W1711724739
MTQL01000006
Actinomycetota
Leifsonia sp. ALI-44-B [MTQL]
732489
732417
-
Gln
CTG
[ENA]
¡û
>WENV170784298
MCHG01000527
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
6768
6696
-
Gln
CTG
[ENA]
¢þ
>C191011695
CP014619
Actinomycetota
Frondihabitans sp. 762G35 [CP014619]
483160
483232
+
Gln
CTG
-
¡û
>C191056533
CP028137
Actinomycetota
Rathayibacter festucae DSM 15932 [CP028137]
2160027
2159955
-
Gln
CTG
-
¡û
>C191100990
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
2455925
2455999
+
Gln
CTG
-
¡û
>C191182553
CP040750
Actinomycetota
Plantibacter sp. M259 [CP040750]
3576471
3576543
+
Gln
CTG
-
¡û
>W1911671574
QGAE01000001
Actinomycetota
Plantibacter flavus CFBP13513 [QGAE]
738123
738049
-
Gln
CTG
[ENA]
¡û
>W1810169029
PJJS01000054
Actinomycetota
Cryobacterium sp. M96 [PJJS]
64339
64411
+
Gln
CTG
[ENA]
¡û
>W1810169118
PJJU01000057
Actinomycetota
Cryobacterium sp. M25 [PJJU]
44881
44953
+
Gln
CTG
[ENA]
¡û
>W1810169166
PJJV01000081
Actinomycetota
Cryobacterium sp. M23 [PJJV]
104873
104945
+
Gln
CTG
[ENA]
¡û
>SRA1015260
SRR023845.525549
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
11
83
+
Gln
CTG
[SRA]
>SRA1016163
SRR023846.376186
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
171
99
-
Gln
CTG
[SRA]
>W1511509395
JXQZ01000107
Actinomycetota
Frigoribacterium sp. MEB024 [JXQZ]
28821
28747
-
Gln
CTG
[ENA]
¡û
>C161073116
CP014513
Actinomycetota
Frondihabitans sp. PAMC 28766 [CP014513]
1427240
1427314
+
Gln
CTG
[Ensembl]
¡û
>W1610620587
LHOZ01000006
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
18786
18712
-
Gln
CTG
[ENA]
¡û
>W1610732034
LMJX01000002
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
757199
757125
-
Gln
CTG
[ENA]
¡û
>W1610732250
LMKB01000007
Actinomycetota
Frigoribacterium sp. Leaf8 [LMKB]
107818
107744
-
Gln
CTG
[ENA]
¡û
>W1610733710
LMLG01000005
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
2576
2650
+
Gln
CTG
[ENA]
¡û
>W1610735103
LMMF01000002
Actinomycetota
Frigoribacterium sp. Leaf254 [LMMF]
215772
215698
-
Gln
CTG
[ENA]
¡û
>W1610735475
LMMO01000001
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
599138
599210
+
Gln
CTG
[ENA]
¡û
>W1610737056
LMNV01000003
Actinomycetota
Frondihabitans sp. Leaf304 [LMNV]
647824
647750
-
Gln
CTG
[ENA]
¡û
>W1610737369
LMOB01000001
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
806425
806351
-
Gln
CTG
[ENA]
¡û
>W1610738388
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
2811
2885
+
Gln
CTG
[ENA]
¡û
>W1610738550
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
757246
757172
-
Gln
CTG
[ENA]
¡û
>W1610738607
LMPB01000003
Actinomycetota
Frigoribacterium sp. Leaf172 [LMPB]
2625
2697
+
Gln
CTG
[ENA]
¡û
>W1610739255
LMPQ01000011
Actinomycetota
Frigoribacterium sp. Leaf186 [LMPQ]
2640
2714
+
Gln
CTG
[ENA]
¡û
>W1610740485
LMQR01000002
Actinomycetota
Frigoribacterium sp. Leaf415 [LMQR]
216183
216109
-
Gln
CTG
[ENA]
¡û
>W1610981916
LWCT01000035
Actinomycetota
Plantibacter sp. H53 [LWCT]
132539
132613
+
Gln
CTG
[ENA]
¡û
>W1710520670
FNFU01000015
Actinomycetota
Cryobacterium psychrotolerans [FNFU]
6111
6039
-
Gln
CTG
[ENA]
¡û
>W1710603948
FUZO01000001
Actinomycetota
Plantibacter cousiniae [FUZO]
1912833
1912907
+
Gln
CTG
[ENA]
¡û
>W1710604001
FUZP01000001
Actinomycetota
Okibacterium fritillariae [FUZP]
1304527
1304599
+
Gln
CTG
[ENA]
¡û
>W1710608057
FXAP01000001
Actinomycetota
Plantibacter flavus [FXAP]
677772
677846
+
Gln
CTG
[ENA]
¡û
>W1710609338
FXWJ01000002
Actinomycetota
Plantibacter sp. VKM Ac-1784 elymi [FXWJ]
707570
707496
-
Gln
CTG
[ENA]
¡û
>W1710748281
LHOZ01000006
Actinomycetota
Frigoribacterium sp. RIT-PI-h [LHOZ]
18786
18712
-
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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