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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655110 (39 seq.)
>W1710907003
LNOL01000037
Betaproteobacteria
Alcaligenes faecalis [LNOL]
187840
187914
+
Arg
CCT
[ENA]
¡û
>W1710995944
LQAS01000010
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
351705
351779
+
Arg
CCT
[ENA]
¡û
>W1711710496
MSZN01000008
Betaproteobacteria
Alcaligenes faecalis [MSZN]
176789
176863
+
Arg
CCT
[ENA]
¡û
>W1711710559
MSZO01000008
Betaproteobacteria
Alcaligenes faecalis [MSZO]
6163
6089
-
Arg
CCT
[ENA]
¡û
>W1711710629
MSZP01000015
Betaproteobacteria
Alcaligenes faecalis [MSZP]
6192
6118
-
Arg
CCT
[ENA]
¡û
>W1711710682
MSZQ01000041
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
6721
6795
+
Arg
CCT
[ENA]
¡û
>W1711710712
MSZR01000010
Betaproteobacteria
Alcaligenes faecalis [MSZR]
6183
6109
-
Arg
CCT
[ENA]
¡û
>W1711711900
MTBI01000002
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
349555
349481
-
Arg
CCT
[ENA]
¡û
>C171115497
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
938241
938315
+
Arg
CCT
-
¡û
>W131051780
AMXV01000039
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
32389
32463
+
Arg
CCT
[ENA]
¡û
>W131223040
AUBT01000002
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
187562
187636
+
Arg
CCT
[ENA]
¡û
>W141104433
AVOG02000056
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
217473
217547
+
Arg
CCT
[ENA]
¡û
>W141237718
BBJQ01000004
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
37423
37497
+
Arg
CCT
[ENA]
¡û
>WENV183733475
PJTY01002625
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
508
434
-
Arg
CCT
[ENA]
¢þ
>WENV183738374
PJUD01180521
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
333
259
-
Arg
CCT
[ENA]
¢þ
>WENV170645936
JQGF01001184
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
1602
1676
+
Arg
CCT
[ENA]
¢þ
>WENV170646006
JQGF01006165
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
2667
2593
-
Arg
CCT
[ENA]
¢þ
>WENV170655087
JTFN01004539
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
612
538
-
Arg
CCT
[ENA]
¢þ
>WENV170655506
JTFN01039558
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
111
185
+
Arg
CCT
[ENA]
¢þ
>WENV170656163
JTFO01002258
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
3441
3515
+
Arg
CCT
[ENA]
¢þ
>WENV170656204
JTFO01004298
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
3986
3912
-
Arg
CCT
[ENA]
¢þ
>WENV170657115
JTFO01087642
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
827
753
-
Arg
CCT
[ENA]
¢þ
>WENV170965901
MTEV01008979
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
837
763
-
Arg
CCT
[ENA]
¢þ
>C181053215
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
876002
876076
+
Arg
CCT
-
¡û
>C181088574
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
645911
645985
+
Arg
CCT
-
¡û
>C191085252
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
1111000
1111074
+
Arg
CCT
-
¡û
>C191091152
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
3387323
3387397
+
Arg
CCT
-
¡û
>C191113941
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
1920588
1920662
+
Arg
CCT
-
¡û
>C191149638
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
2714558
2714632
+
Arg
CCT
-
¡û
>W1810583900
QEXO01000002
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
342512
342438
-
Arg
CCT
[ENA]
¡û
>W1511321032
JQCV01000004
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
352817
352743
-
Arg
CCT
[ENA]
¡û
>W1511537471
JZBR01000007
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
662818
662892
+
Arg
CCT
[ENA]
¡û
>C161051376
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
1405684
1405610
-
Arg
CCT
[Ensembl]
¡û
>W121091225
AKMR01000013
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
45794
45720
-
Arg
CCT
[ENA]
¡û
>W1610093539
CYTB01000001
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
440561
440635
+
Arg
CCT
[ENA]
¡û
>W1610766017
LNOL01000037
Betaproteobacteria
Alcaligenes faecalis [LNOL]
187840
187914
+
Arg
CCT
[ENA]
¡û
>W1610850601
LQAS01000010
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
351705
351779
+
Arg
CCT
[ENA]
¡û
>W1610921508
LSUO01000003
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
6190
6116
-
Arg
CCT
[ENA]
¡û
>W1710082515
BDHG01000002
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
440606
440680
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK