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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655146 (6 seq.)
>WENV180250196
OBEQ010263664
[OBEQ] groundwater metagenome; groundwater
4
79
+
Asp
GTC
[ENA]
¡û
>WENV180259150
OBEQ011076433
[OBEQ] groundwater metagenome; groundwater
1166
1241
+
Asp
GTC
[ENA]
¡û
>WENV180262125
OBEQ011358716
[OBEQ] groundwater metagenome; groundwater
487
412
-
Asp
GTC
[ENA]
¡û
>WENV180266981
OBEQ011804279
[OBEQ] groundwater metagenome; groundwater
76
1
-
Asp
GTC
[ENA]
¡û
>WENV180268150
OBEQ011935251
[OBEQ] groundwater metagenome; groundwater
4560
4635
+
Asp
GTC
[ENA]
¡û
>WENV170661876
JXWV01142773
[JXWV] soil metagenome; rice field; organic FYM Plot
86
161
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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