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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655195 (102 seq.)
>W1710943757
LOPZ01000013
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
18370
18296
-
Gly
GCC
[ENA]
¡û
>W1710943771
LOPZ01000057
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
7295
7221
-
Gly
GCC
[ENA]
¡û
>W1710943773
LOPZ01000057
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
7101
7027
-
Gly
GCC
[ENA]
¡û
>W1710943775
LOPZ01000057
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
6911
6837
-
Gly
GCC
[ENA]
¡û
>W1711029621
LRFI01000013
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
18370
18296
-
Gly
GCC
[ENA]
¡û
>W1711029635
LRFI01000056
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
7295
7221
-
Gly
GCC
[ENA]
¡û
>W1711029637
LRFI01000056
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
7101
7027
-
Gly
GCC
[ENA]
¡û
>W1711029639
LRFI01000056
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
6911
6837
-
Gly
GCC
[ENA]
¡û
>W1711144285
LVIA01000048
Gammaproteobacteria
Halomonas sp. KX33721 [LVIA]
3909
3983
+
Gly
GCC
[ENA]
¡û
>C171109326
CP020562
Gammaproteobacteria
Halomonas sp. GT [CP020562]
1182869
1182943
+
Gly
GCC
-
¡û
>C171109328
CP020562
Gammaproteobacteria
Halomonas sp. GT [CP020562]
1183051
1183125
+
Gly
GCC
-
¡û
>C171109330
CP020562
Gammaproteobacteria
Halomonas sp. GT [CP020562]
1183237
1183311
+
Gly
GCC
-
¡û
>W131174821
ARIT01000017
Gammaproteobacteria
Halomonas zhanjiangensis DSM 21076 [ARIT]
454639
454713
+
Gly
GCC
[ENA]
¡û
>W131174823
ARIT01000017
Gammaproteobacteria
Halomonas zhanjiangensis DSM 21076 [ARIT]
454820
454894
+
Gly
GCC
[ENA]
¡û
>W131174825
ARIT01000017
Gammaproteobacteria
Halomonas zhanjiangensis DSM 21076 [ARIT]
455090
455164
+
Gly
GCC
[ENA]
¡û
>W131174831
ARIT01000017
Gammaproteobacteria
Halomonas zhanjiangensis DSM 21076 [ARIT]
601018
600944
-
Gly
GCC
[ENA]
¡û
>WENV170268661
CERG01113885
[CERG] marine metagenome genome assembly TARA_068_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2
76
+
Gly
GCC
[ENA]
¢þ
>WENV170594846
FUFK011501603
[FUFK] metagenome; unknown
322
248
-
Gly
GCC
[ENA]
¢þ
>WENV170809769
MDSW01137832
[MDSW] marine metagenome; seawater
108
34
-
Gly
GCC
[ENA]
¢þ
>WENV170863091
MDTB01086568
[MDTB] marine metagenome; seawater
2345
2419
+
Gly
GCC
[ENA]
¢þ
>WENV170920935
MDTG01005759
[MDTG] marine metagenome; seawater
10
84
+
Gly
GCC
[ENA]
¢þ
>C181019872
CP016490
Gammaproteobacteria
Halomonas sp. GFAJ-1 [CP016490]
1926501
1926575
+
Gly
GCC
-
¡û
>C181019874
CP016490
Gammaproteobacteria
Halomonas sp. GFAJ-1 [CP016490]
1926698
1926772
+
Gly
GCC
-
¡û
>C181019876
CP016490
Gammaproteobacteria
Halomonas sp. GFAJ-1 [CP016490]
1926895
1926969
+
Gly
GCC
-
¡û
>C181019878
CP016490
Gammaproteobacteria
Halomonas sp. GFAJ-1 [CP016490]
1927108
1927182
+
Gly
GCC
-
¡û
>C191028842
CP024811
Gammaproteobacteria
Halomonas alkaliphila X3 [CP024811]
112905
112831
-
Gly
GCC
-
¡û
>C191028844
CP024811
Gammaproteobacteria
Halomonas alkaliphila X3 [CP024811]
112706
112632
-
Gly
GCC
-
¡û
>C191028846
CP024811
Gammaproteobacteria
Halomonas alkaliphila X3 [CP024811]
112502
112428
-
Gly
GCC
-
¡û
>C191123875
CP034367
Gammaproteobacteria
Halomonas venusta MA-ZP17-13 [CP034367]
1250606
1250680
+
Gly
GCC
-
¡û
>C191123877
CP034367
Gammaproteobacteria
Halomonas venusta MA-ZP17-13 [CP034367]
1250805
1250879
+
Gly
GCC
-
¡û
>C191123879
CP034367
Gammaproteobacteria
Halomonas venusta MA-ZP17-13 [CP034367]
1250992
1251066
+
Gly
GCC
-
¡û
>W141555777
JHQL01000001
Gammaproteobacteria
Halomonas alkaliantarctica [JHQL]
834715
834789
+
Gly
GCC
[ENA]
¡û
>W141555779
JHQL01000001
Gammaproteobacteria
Halomonas alkaliantarctica [JHQL]
834914
834988
+
Gly
GCC
[ENA]
¡û
>W141555781
JHQL01000001
Gammaproteobacteria
Halomonas alkaliantarctica [JHQL]
835116
835190
+
Gly
GCC
[ENA]
¡û
>W141802183
JPEU01000001
Gammaproteobacteria
Halomonas sp. SUBG004 [JPEU]
533594
533520
-
Gly
GCC
[ENA]
¡û
>W141802185
JPEU01000001
Gammaproteobacteria
Halomonas sp. SUBG004 [JPEU]
533407
533333
-
Gly
GCC
[ENA]
¡û
>W1910184126
BJOI01000003
Gammaproteobacteria
Halomonas meridiana NBRC 15608 [BJOI]
5194
5120
-
Gly
GCC
[ENA]
¡û
>W1910184128
BJOI01000003
Gammaproteobacteria
Halomonas meridiana NBRC 15608 [BJOI]
5000
4926
-
Gly
GCC
[ENA]
¡û
>W1910184130
BJOI01000003
Gammaproteobacteria
Halomonas meridiana NBRC 15608 [BJOI]
4810
4736
-
Gly
GCC
[ENA]
¡û
>W1910184156
BJOI01000041
Gammaproteobacteria
Halomonas meridiana NBRC 15608 [BJOI]
26900
26826
-
Gly
GCC
[ENA]
¡û
>W1910377543
FUKM01000014
Gammaproteobacteria
Halomonas sp. JB380 [FUKM]
310
236
-
Gly
GCC
[ENA]
¡û
>W1910377546
FUKM01000017
Gammaproteobacteria
Halomonas sp. JB380 [FUKM]
39257
39331
+
Gly
GCC
[ENA]
¡û
>W1910377552
FUKM01000017
Gammaproteobacteria
Halomonas sp. JB380 [FUKM]
172148
172074
-
Gly
GCC
[ENA]
¡û
>W1911245363
NSKA01000001
Gammaproteobacteria
Halomonas humidisoli WN018 [NSKA]
172897
172823
-
Gly
GCC
[ENA]
¡û
>W1911245365
NSKA01000001
Gammaproteobacteria
Halomonas humidisoli WN018 [NSKA]
172698
172624
-
Gly
GCC
[ENA]
¡û
>W1911245367
NSKA01000001
Gammaproteobacteria
Halomonas humidisoli WN018 [NSKA]
172511
172437
-
Gly
GCC
[ENA]
¡û
>W1810364645
PVTK01000001
Gammaproteobacteria
Halomonas songnenensis CGMCC 1.12152 [PVTK]
486994
486920
-
Gly
GCC
[ENA]
¡û
>W1810364647
PVTK01000001
Gammaproteobacteria
Halomonas songnenensis CGMCC 1.12152 [PVTK]
486815
486741
-
Gly
GCC
[ENA]
¡û
>W1810364649
PVTK01000001
Gammaproteobacteria
Halomonas songnenensis CGMCC 1.12152 [PVTK]
486614
486540
-
Gly
GCC
[ENA]
¡û
>W1810364683
PVTK01000013
Gammaproteobacteria
Halomonas songnenensis CGMCC 1.12152 [PVTK]
40188
40262
+
Gly
GCC
[ENA]
¡û
>C151033742
CP007757
Gammaproteobacteria
Halomonas campaniensis LS21 [CP007757]
2547589
2547663
+
Gly
GCC
[Ensembl]
¡û
>C151033744
CP007757
Gammaproteobacteria
Halomonas campaniensis LS21 [CP007757]
2547788
2547862
+
Gly
GCC
[Ensembl]
¡û
>C151033746
CP007757
Gammaproteobacteria
Halomonas campaniensis LS21 [CP007757]
2547975
2548049
+
Gly
GCC
[Ensembl]
¡û
>W1511541312
JZEM01000001
Gammaproteobacteria
Halomonas meridiana R1t3 [JZEM]
350
276
-
Gly
GCC
[ENA]
¡û
>W1511541314
JZEM01000001
Gammaproteobacteria
Halomonas meridiana R1t3 [JZEM]
156
82
-
Gly
GCC
[ENA]
¡û
>W1511541319
JZEM01000003
Gammaproteobacteria
Halomonas meridiana R1t3 [JZEM]
3509
3583
+
Gly
GCC
[ENA]
¡û
>W1511541363
JZEM01000065
Gammaproteobacteria
Halomonas meridiana R1t3 [JZEM]
113
187
+
Gly
GCC
[ENA]
¡û
>W11171867
AFQW01000024
Gammaproteobacteria
Halomonas sp. TD01 [AFQW]
45205
45279
+
Gly
GCC
[ENA]
¡û
>W11171869
AFQW01000024
Gammaproteobacteria
Halomonas sp. TD01 [AFQW]
45403
45477
+
Gly
GCC
[ENA]
¡û
>W11171871
AFQW01000024
Gammaproteobacteria
Halomonas sp. TD01 [AFQW]
45608
45682
+
Gly
GCC
[ENA]
¡û
>W1610041562
BAWX01000004
Gammaproteobacteria
Halomonas sp. JCM 19031 [BAWX]
117227
117153
-
Gly
GCC
[ENA]
¡û
>W1610041593
BAWX01000037
Gammaproteobacteria
Halomonas sp. JCM 19031 [BAWX]
14080
14154
+
Gly
GCC
[ENA]
¡û
>W1610041595
BAWX01000037
Gammaproteobacteria
Halomonas sp. JCM 19031 [BAWX]
14270
14344
+
Gly
GCC
[ENA]
¡û
>W1610041611
BAWY01000004
Gammaproteobacteria
Halomonas sp. JCM 19032 [BAWY]
3631
3705
+
Gly
GCC
[ENA]
¡û
>W1610041649
BAWY01000054
Gammaproteobacteria
Halomonas sp. JCM 19032 [BAWY]
36
110
+
Gly
GCC
[ENA]
¡û
>W1610041652
BAWY01000065
Gammaproteobacteria
Halomonas sp. JCM 19032 [BAWY]
225
151
-
Gly
GCC
[ENA]
¡û
>W121023764
AHBC01000017
Gammaproteobacteria
Halomonas sp. GFAJ-1 [AHBC]
45679
45605
-
Gly
GCC
[ENA]
¡û
>W121023766
AHBC01000017
Gammaproteobacteria
Halomonas sp. GFAJ-1 [AHBC]
45482
45408
-
Gly
GCC
[ENA]
¡û
>W121023768
AHBC01000017
Gammaproteobacteria
Halomonas sp. GFAJ-1 [AHBC]
45269
45195
-
Gly
GCC
[ENA]
¡û
>W1610551202
JYFV01000001
Gammaproteobacteria
Halomonas axialensis [JYFV]
47371
47445
+
Gly
GCC
[ENA]
¡û
>W1610551249
JYFV01000092
Gammaproteobacteria
Halomonas axialensis [JYFV]
6188
6114
-
Gly
GCC
[ENA]
¡û
>W1610800057
LOPZ01000013
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
18370
18296
-
Gly
GCC
[ENA]
¡û
>W1610800071
LOPZ01000057
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
7295
7221
-
Gly
GCC
[ENA]
¡û
>W1610800073
LOPZ01000057
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
7101
7027
-
Gly
GCC
[ENA]
¡û
>W1610800075
LOPZ01000057
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
6911
6837
-
Gly
GCC
[ENA]
¡û
>W1610877889
LRFI01000013
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
18370
18296
-
Gly
GCC
[ENA]
¡û
>W1610877903
LRFI01000056
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
7295
7221
-
Gly
GCC
[ENA]
¡û
>W1610877905
LRFI01000056
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
7101
7027
-
Gly
GCC
[ENA]
¡û
>W1610877907
LRFI01000056
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
6911
6837
-
Gly
GCC
[ENA]
¡û
>W1610955293
LVIA01000048
Gammaproteobacteria
Halomonas sp. KX33721 [LVIA]
3909
3983
+
Gly
GCC
[ENA]
¡û
>W1710038656
BAWX01000004
Gammaproteobacteria
Halomonas sp. JCM 19031 [BAWX]
117227
117153
-
Gly
GCC
[ENA]
¡û
>W1710038687
BAWX01000037
Gammaproteobacteria
Halomonas sp. JCM 19031 [BAWX]
14080
14154
+
Gly
GCC
[ENA]
¡û
>W1710038689
BAWX01000037
Gammaproteobacteria
Halomonas sp. JCM 19031 [BAWX]
14270
14344
+
Gly
GCC
[ENA]
¡û
>W1710038705
BAWY01000004
Gammaproteobacteria
Halomonas sp. JCM 19032 [BAWY]
3631
3705
+
Gly
GCC
[ENA]
¡û
>W1710038743
BAWY01000054
Gammaproteobacteria
Halomonas sp. JCM 19032 [BAWY]
36
110
+
Gly
GCC
[ENA]
¡û
>W1710038746
BAWY01000065
Gammaproteobacteria
Halomonas sp. JCM 19032 [BAWY]
225
151
-
Gly
GCC
[ENA]
¡û
>W1710547535
FODB01000031
Gammaproteobacteria
Halomonas aquamarina [FODB]
24380
24454
+
Gly
GCC
[ENA]
¡û
>W1710547544
FODB01000049
Gammaproteobacteria
Halomonas aquamarina [FODB]
27196
27122
-
Gly
GCC
[ENA]
¡û
>W1710593938
FSQX01000001
Gammaproteobacteria
Halomonas meridiana [FSQX]
708086
708160
+
Gly
GCC
[ENA]
¡û
>W1710593940
FSQX01000001
Gammaproteobacteria
Halomonas meridiana [FSQX]
708280
708354
+
Gly
GCC
[ENA]
¡û
>W1710593942
FSQX01000001
Gammaproteobacteria
Halomonas meridiana [FSQX]
708470
708544
+
Gly
GCC
[ENA]
¡û
>W1710593985
FSQX01000001
Gammaproteobacteria
Halomonas meridiana [FSQX]
876545
876471
-
Gly
GCC
[ENA]
¡û
>W1710594007
FSQY01000001
Gammaproteobacteria
Halomonas meridiana [FSQY]
2963896
2963970
+
Gly
GCC
[ENA]
¡û
>W1710594009
FSQY01000001
Gammaproteobacteria
Halomonas meridiana [FSQY]
2964090
2964164
+
Gly
GCC
[ENA]
¡û
>W1710594011
FSQY01000001
Gammaproteobacteria
Halomonas meridiana [FSQY]
2964280
2964354
+
Gly
GCC
[ENA]
¡û
>W1710594025
FSQY01000001
Gammaproteobacteria
Halomonas meridiana [FSQY]
3132355
3132281
-
Gly
GCC
[ENA]
¡û
>W1710595032
FSRR01000001
Gammaproteobacteria
Halomonas meridiana [FSRR]
1548281
1548355
+
Gly
GCC
[ENA]
¡û
>W1710595065
FSRR01000001
Gammaproteobacteria
Halomonas meridiana [FSRR]
1716740
1716666
-
Gly
GCC
[ENA]
¡û
>W1710595067
FSRR01000001
Gammaproteobacteria
Halomonas meridiana [FSRR]
1716546
1716472
-
Gly
GCC
[ENA]
¡û
>W1710595069
FSRR01000001
Gammaproteobacteria
Halomonas meridiana [FSRR]
1716356
1716282
-
Gly
GCC
[ENA]
¡û
>W1710661475
JYFV01000001
Gammaproteobacteria
Halomonas axialensis [JYFV]
47371
47445
+
Gly
GCC
[ENA]
¡û
>W1710661522
JYFV01000092
Gammaproteobacteria
Halomonas axialensis [JYFV]
6188
6114
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK