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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.656020 (139 seq.)
>W1711107868
LTTE01000212
Bacteroidota
Prevotella sp. HMSC077E08 [LTTE]
31204
31278
+
Pseudo
TTC
[ENA]
¡û
>W1711108752
LTUA01000073
Bacteroidota
Prevotella sp. HMSC069G02 [LTUA]
9365
9291
-
Pseudo
TTC
[ENA]
¡û
>W1711109054
LTUI01000018
Bacteroidota
Prevotella sp. HMSC077E09 [LTUI]
31206
31280
+
Pseudo
TTC
[ENA]
¡û
>W131167617
ARDK01000013
Bacteroidota
Segatella paludivivens DSM 17968 [ARDK]
73337
73263
-
Pseudo
TTC
[ENA]
¡û
>W131169001
AREK01000005
Bacteroidota
Prevotella micans DSM 21469 [AREK]
131316
131242
-
Pseudo
TTC
[ENA]
¡û
>W131174722
ARIR01000026
Bacteroidota
Prevotella veroralis DSM 19559 [ARIR]
59278
59204
-
Pseudo
TTC
[ENA]
¡û
>W131174861
ARIU01000040
Bacteroidota
Segatella oris DSM 18711 [ARIU]
52144
52070
-
Pseudo
TTC
[ENA]
¡û
>W131181163
ARNR01000059
Bacteroidota
Segatella maculosa DSM 19339 [ARNR]
18835
18763
-
Pseudo
TTC
[ENA]
¡û
>W131206242
ATFN01000011
Bacteroidota
Hoylesella oralis HGA0225 [ATFN]
330643
330715
+
Pseudo
TTC
[ENA]
¡û
>W131217083
ATWK01000017
Bacteroidota
Prevotella denticola DSM 20614 [ATWK]
39848
39922
+
Pseudo
TTC
[ENA]
¡û
>W131228027
AUFP01000008
Bacteroidota
Segatella albensis DSM 11370 [AUFP]
97214
97140
-
Pseudo
TTC
[ENA]
¡û
>WENV180006106
FLRX01161694
[FLRX] metagenome; saliva
157
229
+
Glu
TTC
[ENA]
¢þ
>WENV180119358
OASD01051132
[OASD] human gut metagenome; ENVO:feces
300
228
-
Glu
TTC
[ENA]
¢þ
>WENV180140923
OATU01001110
[OATU] human gut metagenome; faeces
17860
17934
+
Glu
TTC
[ENA]
¢þ
>WENV180709603
ODFJ01166956
[ODFJ] human metagenome; G_DNA_Tongue dorsum
3
75
+
Glu
TTC
[ENA]
¢þ
>WENV180810496
ODJK01350917
[ODJK] human metagenome; G_DNA_Subgingival plaque
3
75
+
Glu
TTC
[ENA]
¢þ
>WENV180816792
ODJP01060333
[ODJP] human metagenome; G_DNA_Tongue dorsum
125
53
-
Glu
TTC
[ENA]
¢þ
>WENV181092306
OEBC01405503
[OEBC] human metagenome; G_DNA_Supragingival plaque
3
75
+
Glu
TTC
[ENA]
¢þ
>WENV181125495
OEFT01143459
[OEFT] human metagenome; G_DNA_Tongue dorsum
86
14
-
Glu
TTC
[ENA]
¢þ
>W141137348
AWGW01000032
Bacteroidota
Segatella salivae F0493 [AWGW]
60664
60590
-
Pseudo
TTC
[ENA]
¡û
>W141145832
AWUZ01000086
Bacteroidota
Prevotella sp. F0091 [AWUZ]
76183
76109
-
Pseudo
TTC
[ENA]
¡û
>W141202979
AZHT01000100
Bacteroidota
Prevotella sp. HJM029 [AZHT]
239894
239820
-
Pseudo
TTC
[ENA]
¡û
>W141204132
AZJG01000005
Bacteroidota
Hoylesella oralis CC98A [AZJG]
813689
813761
+
Pseudo
TTC
[ENA]
¡û
>W141224640
BAIP01000005
Bacteroidota
Prevotella veroralis JCM 6290 [BAIP]
131643
131569
-
Pseudo
TTC
[ENA]
¡û
>W141225256
BAJC01000008
Bacteroidota
Segatella oris JCM 12252 [BAJC]
65343
65417
+
Pseudo
TTC
[ENA]
¡û
>W141225311
BAJD01000006
Bacteroidota
Segatella albensis JCM 12258 [BAJD]
96969
96895
-
Pseudo
TTC
[ENA]
¡û
>W141225462
BAJG01000029
Bacteroidota
Prevotella denticola JCM 13449 [BAJG]
32289
32215
-
Pseudo
TTC
[ENA]
¡û
>W141225470
BAJH01000001
Bacteroidota
Segatella paludivivens JCM 13650 [BAJH]
313408
313334
-
Pseudo
TTC
[ENA]
¡û
>W141225900
BAJQ01000001
Bacteroidota
Segatella oulorum JCM 14966 [BAJQ]
148538
148612
+
Pseudo
TTC
[ENA]
¡û
>W141226236
BAJX01000005
Bacteroidota
Prevotella histicola JCM 15637 = DNF00424 [BAJX]
26787
26861
+
Pseudo
TTC
[ENA]
¡û
>W141226338
BAJZ01000032
Bacteroidota
Segatella maculosa JCM 15638 [BAJZ]
18554
18482
-
Pseudo
TTC
[ENA]
¡û
>W141226487
BAKG01000007
Bacteroidota
Prevotella dentasini JCM 15908 [BAKG]
43835
43761
-
Pseudo
TTC
[ENA]
¡û
>W141226524
BAKH01000008
Bacteroidota
Prevotella micans JCM 16134 [BAKH]
5567
5493
-
Pseudo
TTC
[ENA]
¡û
>W141226869
BAKO01000005
Bacteroidota
Prevotella fusca JCM 17724 [BAKO]
58064
57990
-
Pseudo
TTC
[ENA]
¡û
>W141226905
BAKP01000002
Bacteroidota
Prevotella scopos JCM 17725 [BAKP]
66117
66043
-
Pseudo
TTC
[ENA]
¡û
>WENV182327556
OHZA01001672
[OHZA] human gut metagenome; feces
401
327
-
Glu
TTC
[ENA]
¢þ
>WENV182342776
OIAI01002614
[OIAI] human gut metagenome; feces
373
447
+
Glu
TTC
[ENA]
¢þ
>WENV182505840
OIUY01010785
[OIUY] human gut metagenome; human gut
353
279
-
Glu
TTC
[ENA]
¢þ
>W141274966
JACD01000007
Bacteroidota
Prevotella sp. ICM33 [JACD]
73778
73852
+
Pseudo
TTC
[ENA]
¡û
>WENV170004916
AJWZ01000185
[AJWZ] human gut metagenome; obese human gut
117
191
+
Glu
TTC
[ENA]
¢þ
>WENV170047187
CDYZ01018055
[CDYZ] gut metagenome; human stools
172
246
+
Glu
TTC
[ENA]
¢þ
>WENV170047199
CDYZ01018625
[CDYZ] gut metagenome; human stools
812
884
+
Glu
TTC
[ENA]
¢þ
>WENV170047265
CDYZ01022079
[CDYZ] gut metagenome; human stools
22480
22554
+
Glu
TTC
[ENA]
¢þ
>WENV170047322
CDYZ01026626
[CDYZ] gut metagenome; human stools
13155
13229
+
Glu
TTC
[ENA]
¢þ
>WENV170047429
CDYZ01032355
[CDYZ] gut metagenome; human stools
9
83
+
Glu
TTC
[ENA]
¢þ
>WENV170048579
CDZA01020573
[CDZA] gut metagenome; human stools
8458
8386
-
Glu
TTC
[ENA]
¢þ
>WENV170049310
CDZA01055436
[CDZA] gut metagenome; human stools
26859
26933
+
Glu
TTC
[ENA]
¢þ
>WENV170049661
CDZA01074714
[CDZA] gut metagenome; human stools
428
354
-
Glu
TTC
[ENA]
¢þ
>WENV170050278
CDZB01021448
[CDZB] gut metagenome; human stools
13149
13221
+
Glu
TTC
[ENA]
¢þ
>WENV170051112
CDZB01055613
[CDZB] gut metagenome; human stools
22613
22687
+
Glu
TTC
[ENA]
¢þ
>WENV170051428
CDZB01068162
[CDZB] gut metagenome; human stools
17440
17514
+
Glu
TTC
[ENA]
¢þ
>WENV170051465
CDZB01069594
[CDZB] gut metagenome; human stools
11934
11860
-
Glu
TTC
[ENA]
¢þ
>WENV170056600
CDZG01007987
[CDZG] gut metagenome; human stools
34846
34772
-
Glu
TTC
[ENA]
¢þ
>WENV170057850
CDZG01053659
[CDZG] gut metagenome; human stools
58690
58764
+
Glu
TTC
[ENA]
¢þ
>WENV170059284
CDZH01041746
[CDZH] gut metagenome; human stools
129046
129120
+
Glu
TTC
[ENA]
¢þ
>WENV170062034
CDZI01075192
[CDZI] gut metagenome; human stools
8737
8663
-
Glu
TTC
[ENA]
¢þ
>WENV170095628
CEAJ01013388
[CEAJ] gut metagenome; human stools
117279
117205
-
Glu
TTC
[ENA]
¢þ
>WENV170096827
CEAK01034260
[CEAK] gut metagenome; human stools
38610
38684
+
Glu
TTC
[ENA]
¢þ
>WENV170097244
CEAL01018532
[CEAL] gut metagenome; human stools
22863
22789
-
Glu
TTC
[ENA]
¢þ
>WENV170097977
CEAM01009640
[CEAM] gut metagenome; human stools
72643
72569
-
Glu
TTC
[ENA]
¢þ
>WENV170109451
CECB01001121
[CECB] gut metagenome; human stools
73572
73498
-
Glu
TTC
[ENA]
¢þ
>WENV170669733
LAHS01001899
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
7677
7603
-
Glu
TTC
[ENA]
¢þ
>WENV171001066
NFZC01014920
[NFZC] gut metagenome; feces
35
109
+
Glu
TTC
[ENA]
¢þ
>C182000011
CP022040
Bacteroidota
Prevotella melaninogenica FDAARGOS_306 [CP022040, CP022041]
341619
341547
-
Glu
TTC
-
¡û
>C182000022
CP023863
Bacteroidota
Prevotella jejuni CD3:33 [CP023863, CP023864]
219824
219896
+
Glu
TTC
-
¡û
>C192000001
AP018049
Bacteroidota
Prevotella melaninogenica GAI 07411 [AP018049, AP018050]
283433
283361
-
Glu
TTC
-
¡û
>C192000016
CP032056
Bacteroidota
Prevotella denticola KCOM 1525 [CP032056, CP032057]
1488006
1487934
-
Glu
TTC
-
¡û
>C192000045
LR134384
Bacteroidota
Segatella oris NCTC13071 [LR134384]
2960369
2960441
+
Glu
TTC
-
¡û
>W09117139
ACBX01000202
Bacteroidota
Segatella copri DSM 18205 [ACBX]
3858
3932
+
Glu
TTC
[ENA]
¡û
>W09134455
ACSI01000031
Bacteroidota
Prevotella melaninogenica ATCC 25845 [ACSI]
79735
79809
+
Glu
TTC
[ENA]
¡û
>W09134756
ACUZ01000013
Bacteroidota
Segatella oris F0302 [ACUZ]
28746
28672
-
Glu
TTC
[ENA]
¡û
>W09134811
ACVA01000031
Bacteroidota
Prevotella veroralis F0319 [ACVA]
30855
30929
+
Glu
TTC
[ENA]
¡û
>W1920000225
FZNZ01000007
Bacteroidota
Prevotella jejuni DSM 26989 [FZNZ]
17578
17650
+
Glu
TTC
[ENA]
¡û
>W1920000698
NMPZ01000012
Bacteroidota
Segatella copri Indica [NMPZ]
43293
43365
+
Glu
TTC
[ENA]
¡û
>W1910550681
FZRE01000005
Bacteroidota
Prevotellaceae bacterium KH2P17 [FZRE]
132973
132899
-
Glu
TTC
[ENA]
¡û
>W1820000183
PYXD01000001
Bacteroidota
Prevotella sp. oral taxon 820 oral taxon 820 W6195 [PYXD]
1373262
1373190
-
Glu
TTC
[ENA]
¡û
>W1820000184
PYXE01000001
Bacteroidota
Prevotella sp. oral taxon 313 oral taxon 313 F0648 [PYXE]
2221252
2221180
-
Glu
TTC
[ENA]
¡û
>W1820000185
PYXG01000003
Bacteroidota
Prevotella sp. oral taxon 376 oral taxon 376 F0043 [PYXG]
142363
142291
-
Glu
TTC
[ENA]
¡û
>W1820000502
QRIE01000009
Bacteroidota
Segatella copri AM22-2 [QRIE]
49868
49796
-
Glu
TTC
[ENA]
¡û
>W1820000503
QRIF01000013
Bacteroidota
Segatella copri AM22-19 [QRIF]
28088
28160
+
Glu
TTC
[ENA]
¡û
>W1820000504
QRIN01000010
Bacteroidota
Segatella copri AM22-1 [QRIN]
28622
28694
+
Glu
TTC
[ENA]
¡û
>W1820000506
QRKB01000005
Bacteroidota
Segatella copri AM16-54 [QRKB]
79940
80012
+
Glu
TTC
[ENA]
¡û
>W1820000511
QRNB01000008
Bacteroidota
Segatella copri AF46-2NS [QRNB]
26559
26631
+
Glu
TTC
[ENA]
¡û
>W1820000513
QRNN01000005
Bacteroidota
Segatella copri AF43-2 [QRNN]
91341
91269
-
Glu
TTC
[ENA]
¡û
>W1820000517
QROP01000013
Bacteroidota
Segatella copri AF38-11 [QROP]
28800
28728
-
Glu
TTC
[ENA]
¡û
>W1820000520
QRSU01000021
Bacteroidota
Segatella copri AF29-19 [QRSU]
23315
23243
-
Glu
TTC
[ENA]
¡û
>W1820000521
QRVA01000016
Bacteroidota
Segatella copri AF24-12 [QRVA]
43642
43570
-
Glu
TTC
[ENA]
¡û
>W1820000523
QRVN01000017
Bacteroidota
Segatella copri AF22-1 [QRVN]
19787
19859
+
Glu
TTC
[ENA]
¡û
>W1820000528
QRYP01000011
Bacteroidota
Segatella copri AF15-25 [QRYP]
32192
32264
+
Glu
TTC
[ENA]
¡û
>W1820000530
QSAG01000002
Bacteroidota
Segatella copri AF12-50 [QSAG]
104975
104903
-
Glu
TTC
[ENA]
¡û
>W1820000531
QSAQ01000003
Bacteroidota
Segatella copri AF11-14 [QSAQ]
117305
117233
-
Glu
TTC
[ENA]
¡û
>W1820000533
QSAV01000004
Bacteroidota
Segatella copri AF10-17 [QSAV]
44395
44323
-
Glu
TTC
[ENA]
¡û
>W1820000535
QSCI01000010
Bacteroidota
Segatella copri OF03-3 [QSCI]
18767
18839
+
Glu
TTC
[ENA]
¡û
>W1820000541
QSFW01000006
Bacteroidota
Segatella copri AM42-23AC [QSFW]
108379
108307
-
Glu
TTC
[ENA]
¡û
>W1820000547
QSIG01000018
Bacteroidota
Prevotella sp. AM34-19LB [QSIG]
18884
18956
+
Glu
TTC
[ENA]
¡û
>W1820000551
QSQJ01000013
Bacteroidota
Prevotella sp. TF12-30 [QSQJ]
13014
12942
-
Glu
TTC
[ENA]
¡û
>W1820000554
QSSA01000008
Bacteroidota
Segatella copri TF06-40 [QSSA]
61651
61579
-
Glu
TTC
[ENA]
¡û
>W1820000557
QSUC01000022
Bacteroidota
Segatella copri OM06-11 [QSUC]
23315
23243
-
Glu
TTC
[ENA]
¡û
>W1820000558
QSUX01000043
Bacteroidota
Segatella copri OM04-1 [QSUX]
24683
24755
+
Glu
TTC
[ENA]
¡û
>W1820000561
QTXV01000032
Bacteroidota
Prevotella sp. AM42-24 [QTXV]
22196
22268
+
Glu
TTC
[ENA]
¡û
>W1820000565
QUCG01000034
Bacteroidota
Prevotella sp. AM23-5 [QUCG]
11725
11653
-
Glu
TTC
[ENA]
¡û
>C151090646
CP012074
Bacteroidota
Prevotella fusca JCM 17724 W1435 [CP012074, CP012075]
1294674
1294748
+
Glu
TTC
-
¡û
>SRA1002714
SRR001668.18181
Metagenomic diagnosis of bacterial infections (SRP000222)
18
92
+
Glu
TTC
[SRA]
>W10103525
ACRB01000073
Bacteroidota
Segatella buccae D17 [ACRB]
15282
15356
+
Glu
TTC
[ENA]
¡û
>W10104976
ACWY01000002
Bacteroidota
Prevotella melaninogenica D18 [ACWY]
62599
62673
+
Pseudo
TTC
[ENA]
¡û
>W10111869
ADDV01000042
Bacteroidota
Segatella oris C735 [ADDV]
64431
64505
+
Pseudo
TTC
[ENA]
¡û
>C10110283
CP002122
Bacteroidota
Prevotella melaninogenica ATCC 25845 [CP002122, CP002123]
292207
292133
-
Glu
TTC
[Ensembl]
¡û
>W11103681
ACRB01000073
Bacteroidota
Segatella buccae D17 [ACRB]
15282
15356
+
Glu
TTC
[ENA]
¡û
>W11107296
ACWY01000002
Bacteroidota
Prevotella melaninogenica D18 [ACWY]
62599
62673
+
Glu
TTC
[ENA]
¡û
>W11113793
ADCT01000042
Bacteroidota
Prevotella sp. C561 [ADCT]
36942
36868
-
Glu
TTC
[ENA]
¡û
>W11114846
ADDV01000042
Bacteroidota
Segatella oris C735 [ADDV]
64431
64505
+
Glu
TTC
[ENA]
¡û
>C11117023
CP002589
Bacteroidota
Prevotella denticola F0289 [CP002589]
938652
938578
-
Glu
TTC
[Ensembl]
¡û
>W11116925
ADGI01000054
Bacteroidota
Segatella oulorum F0390 [ADGI]
32181
32107
-
Glu
TTC
[ENA]
¡û
>W1511351590
JRNJ01000105
Bacteroidota
Prevotella histicola JCM 15637 = DNF00424 [JRNJ]
48259
48185
-
Glu
TTC
[ENA]
¡û
>W1511351785
JRNO01000029
Bacteroidota
Prevotella denticola DNF00960 [JRNO]
631
557
-
Glu
TTC
[ENA]
¡û
>W1511351932
JRNS01000051
Bacteroidota
Prevotella melaninogenica DNF00666 [JRNS]
620
546
-
Glu
TTC
[ENA]
¡û
>W1511472092
JVYU01001356
Bacteroidota
Prevotella denticola 1208_PDEN [JVYU]
767
693
-
Glu
TTC
[ENA]
¡û
>W1511472179
JVYX01000851
Bacteroidota
Segatella buccae 1205_PDEN [JVYX]
939
865
-
Glu
TTC
[ENA]
¡û
>W11142535
AEPD01000010
Bacteroidota
Segatella buccae ATCC 33574 [AEPD]
87619
87693
+
Glu
TTC
[ENA]
¡û
>W11142577
AEPE02000002
Bacteroidota
Hoylesella oralis ATCC 33269 [AEPE]
716951
717023
+
Glu
TTC
[ENA]
¡û
>W11144187
AEQO01000124
Bacteroidota
Segatella salivae DSM 15606 [AEQO]
19948
20022
+
Glu
TTC
[ENA]
¡û
>W11151323
AEWX01000021
Bacteroidota
Prevotella multiformis DSM 16608 [AEWX]
36369
36295
-
Glu
TTC
[ENA]
¡û
>W11151902
AEXO01000065
Bacteroidota
Prevotella denticola CRIS 18C-A [AEXO]
71205
71131
-
Glu
TTC
[ENA]
¡û
>C161094966
CP016204
Bacteroidota
Prevotella scopos JCM 17725 W2052 [CP016204, CP016205]
130305
130379
+
Pseudo
TTC
[Ensembl]
¡û
>W1610102600
CZAM01000482
Bacteroidota
Segatella copri [CZAM]
910
836
-
Pseudo
TTC
[ENA]
¡û
>W121006875
AFXP01000018
Bacteroidota
Prevotella histicola F0411 [AFXP]
48778
48704
-
Glu
TTC
[ENA]
¡û
>W121009428
AGEK01000016
Bacteroidota
Segatella maculosa OT 289 [AGEK]
223223
223151
-
Glu
TTC
[ENA]
¡û
>W121021818
AGWK01000042
Bacteroidota
Prevotella micans F0438 [AGWK]
56985
56911
-
Glu
TTC
[ENA]
¡û
>W121062296
AJIN01000058
Bacteroidota
Prevotella sp. oral taxon 306 oral taxon 306 str. F0472 [AJIN]
1399
1473
+
Glu
TTC
[ENA]
¡û
>W121111666
ALJQ01000022
Bacteroidota
Prevotella sp. MSX73 [ALJQ]
140593
140667
+
Glu
TTC
[ENA]
¡û
>W1610419604
FIZG01000006
Bacteroidota
Prevotella phocaeensis SN19 [FIZG]
62788
62860
+
Pseudo
TTC
[ENA]
¡û
>WENV083199
BAAX01006217
Gut microbiome of Human (healthy human sample F2-V, Adult, Male)
1361
1285
-
Glu
TTC
[ENA]
>W1710105355
CZAM01000482
Bacteroidota
Segatella copri [CZAM]
910
836
-
Pseudo
TTC
[ENA]
¡û
>W1710419340
FIZG01000006
Bacteroidota
Prevotella phocaeensis SN19 [FIZG]
62788
62860
+
Pseudo
TTC
[ENA]
¡û
>W1710553840
FOHY01000005
Bacteroidota
Prevotella sp. kh1p2 [FOHY]
46918
46992
+
Glu
TTC
[ENA]
¡û
>W1710562321
FOOW01000004
Bacteroidota
Prevotella sp. KH2C16 [FOOW]
109653
109579
-
Glu
TTC
[ENA]
¡û
>W1710584640
FQVS01000001
Bacteroidota
Hoylesella oralis [FQVS]
138157
138085
-
Pseudo
TTC
[ENA]
¡û
>W1710585007
FQWA01000004
Bacteroidota
Prevotella scopos JCM 17725 [FQWA]
66321
66247
-
Pseudo
TTC
[ENA]
¡û
>W1710601542
FUXK01000001
Bacteroidota
Segatella oulorum [FUXK]
148920
148994
+
Pseudo
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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