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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.65620 (16 seq.)
>W1711055101
LRUI01000006
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
117130
117216
+
Leu
CAA
[ENA]
¡û
>W131241493
BARX01000011
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
92113
92027
-
Leu
CAA
[ENA]
¡û
>C171066103
CP017689
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [CP017689]
3170984
3170898
-
Leu
CAA
-
¡û
>WENV170024475
BCQL01064985
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
677
591
-
Leu
CAA
[ENA]
¡û
>W1910178274
BJEQ01000013
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
80058
79972
-
Leu
CAA
[ENA]
¡û
>W2010091613
BJEQ01000013
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
80058
79972
-
Leu
CAA
[ENA]
¡û
>W2011858159
UNRE01000004
Gammaproteobacteria
Agarivorans sp. Alg241-V36 [UNRE]
227846
227760
-
Leu
CAA
[ENA]
¡û
>W2012330202
WHRY01000006
Gammaproteobacteria
Agarivorans sp. B2Z047 [WHRY]
183778
183864
+
Leu
CAA
[ENA]
¡û
>W2110016264
BLPI01000001
Gammaproteobacteria
Agarivorans litoreus NBRC 110444 [BLPI]
1284449
1284363
-
Leu
CAA
[ENA]
¡û
>W2110020791
BMDY01000009
Gammaproteobacteria
Agarivorans gilvus CGMCC 1.10131 [BMDY]
127821
127735
-
Leu
CAA
[ENA]
¡û
>C211007633
AP023032
Gammaproteobacteria
Agarivorans albus JCM 21469 [AP023032]
3847639
3847553
-
Leu
CAA
-
¡û
>C211007727
AP023033
Gammaproteobacteria
Agarivorans aestuarii KCTC 32543 [AP023033]
3723912
3723826
-
Leu
CAA
-
¡û
>C231249191
CP088080
Gammaproteobacteria
Agarivorans sp. B2Z047 [CP088080]
4471395
4471309
-
Leu
CAA
-
¡û
>C231370398
CP096670
Gammaproteobacteria
Agarivorans sp. TSD2052 [CP096670]
823726
823812
+
Leu
CAA
-
¡û
>C161049648
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
3632460
3632546
+
Leu
CAA
-
¡û
>W1610896147
LRUI01000006
Gammaproteobacteria
Thalassotalea crassostreae LPB0090 [LRUI]
117130
117216
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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