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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.656696 (23 seq.)
>W1711081243
LSSA01000319
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
34552
34481
-
Thr
TGT
[ENA]
¡û
>W1711283612
LZQD01000003
Cyanobacteriota
Trichormus sp. NMC-1 [LZQD]
442173
442099
-
Thr
TGT
[ENA]
¡û
>W141022929
AJWF01000012
Cyanobacteriota
Anabaena sp. PCC 7108 [AJWF]
1093969
1094040
+
Thr
TGT
[ENA]
¡û
>w002282
AAAY02000035
Cyanobacteriota
Nostoc punctiforme [AAAY]
31528
31602
+
Thr
TGT
[ENA]
¡û
>C08006928
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
5574615
5574544
-
Thr
TGT
[Ensembl]
¡û
>WENV171003106
NNBT01001045
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
1459
1530
+
Thr
TGT
[ENA]
¢þ
>WENV171003429
NNBU01000012
[NNBU] plant metagenome; symbiotic tissue sample KVJ2
21875
21804
-
Thr
TGT
[ENA]
¢þ
>WENV171003711
NNBV01000462
[NNBV] plant metagenome; symbiotic tissue sample KVS11
3791
3862
+
Thr
TGT
[ENA]
¢þ
>C181105236
CP024785
Cyanobacteriota
Nostoc flagelliforme CCNUN1 [CP024785]
6063818
6063889
+
Thr
TGT
-
¡û
>C181137711
CP026681
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' N6 [CP026681]
1355905
1355976
+
Thr
TGT
-
¡û
>C181137801
CP026692
Cyanobacteriota
Nostoc sp. 'Lobaria pulmonaria [5183] cyanobiont' [CP026692]
2144566
2144637
+
Thr
TGT
-
¡û
>W09125766
ACIR01000131
Cyanobacteriota
Trichormus azollae 708 [ACIR]
8313
8384
+
Thr
TGT
[ENA]
¡û
>C191083058
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
5675552
5675481
-
Thr
TGT
-
¡û
>W1910020526
BDUD01000001
Cyanobacteriota
Nostoc commune NIES-4072 [BDUD]
5827908
5827837
-
Thr
TGT
[ENA]
¡û
>W1910646705
LWSY01000178
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
43315
43244
-
Thr
TGT
[ENA]
¡û
>W1911118707
NOLI01000260
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 213 [NOLI]
2559
2488
-
Thr
TGT
[ENA]
¡û
>W1911118765
NOLJ01000014
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
133001
133072
+
Thr
TGT
[ENA]
¡û
>W1911118850
NOLK01000166
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
6899
6970
+
Thr
TGT
[ENA]
¡û
>W1911244288
NSHF01000559
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
585
514
-
Thr
TGT
[ENA]
¡û
>W1911244312
NSHF01000870
Cyanobacteriota
Nostoc sp. 'Peltigera malacea cyanobiont' DB3992 [NSHF]
1768
1697
-
Thr
TGT
[ENA]
¡û
>C11115530
CP002059
Cyanobacteriota
Nostoc azollae' 0708 [CP002059]
497427
497498
+
Thr
TGT
[Ensembl]
¡û
>C131004959
CP003642
Cyanobacteriota
Cylindrospermum stagnale PCC 7417 [CP003642]
1527227
1527156
-
Thr
TGT
[Ensembl]
¡û
>C131005074
CP003659
Cyanobacteriota
Anabaena cylindrica PCC 7122 [CP003659]
5482803
5482732
-
Thr
TGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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