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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.65679 (35 seq.)
>WENV180197856
OBAB01026077
[OBAB] human gut metagenome; faeces
321
236
-
Leu
TAA
[ENA]
¢þ
>WENV180446951
OBXC01004716
[OBXC] human gut metagenome; faeces
4235
4150
-
Leu
TAA
[ENA]
¢þ
>WENV180455293
OBXO01001070
[OBXO] human gut metagenome; faeces
14695
14610
-
Leu
TAA
[ENA]
¢þ
>WENV182409818
OIFJ01000400
[OIFJ] human gut metagenome; stool
110
195
+
Leu
TAA
[ENA]
¢þ
>WENV182471250
OIPI01030930
[OIPI] human gut metagenome; human gut
87
3
-
Leu
TAA
[ENA]
¢þ
>WENV182961877
OKWL01001269
[OKWL] human gut metagenome; stool
110
195
+
Leu
TAA
[ENA]
¢þ
>WENV182962570
OKWN01006215
[OKWN] human gut metagenome; stool
764
679
-
Leu
TAA
[ENA]
¢þ
>WENV182965862
OKWT01000730
[OKWT] human gut metagenome; stool
2473
2388
-
Leu
TAA
[ENA]
¢þ
>WENV183589422
OOCW01000804
[OOCW] human gut metagenome; human gut
25823
25738
-
Leu
TAA
[ENA]
¢þ
>WENV170785225
MDSP01002776
[MDSP] gut metagenome; Stomach gut content
3208
3293
+
Leu
TAA
[ENA]
¢þ
>WENV170785790
MDSQ01000008
[MDSQ] gut metagenome; Hindgut content
8
93
+
Leu
TAA
[ENA]
¢þ
>C191128876
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
757249
757334
+
Leu
TAA
-
¡û
>C191128889
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
831155
831240
+
Leu
TAA
-
¡û
>C191128945
CP034675
Bacillota
Cellulosilyticum sp. WCF-2 [CP034675]
4369543
4369458
-
Leu
TAA
-
¡û
>W1910217668
FMMP01000007
Bacillota
Cellulosilyticum sp. I15G10I2 [FMMP]
321723
321638
-
Leu
TAA
[ENA]
¡û
>W1910217700
FMMP01000019
Bacillota
Cellulosilyticum sp. I15G10I2 [FMMP]
652
737
+
Leu
TAA
[ENA]
¡û
>W10118892
ADVF01000020
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
17200
17285
+
Leu
TAA
[ENA]
¡û
>W10118902
ADVF01000028
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
15855
15940
+
Leu
TAA
[ENA]
¡û
>W10118954
ADVF01000102
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
674
759
+
Leu
TAA
[ENA]
¡û
>C11105520
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
104715
104800
+
Leu
TAA
[Ensembl]
¡û
>C11105533
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
173410
173495
+
Leu
TAA
[Ensembl]
¡û
>C11105591
CP002582
Bacillota
Cellulosilyticum lentocellum DSM 5427 [CP002582]
3619991
3619906
-
Leu
TAA
[Ensembl]
¡û
>W1510725204
CXYW01000007
Bacillota
Niameybacter massiliensis mt14 [CXYW]
18021
17934
-
Leu
TAA
[ENA]
¡û
>W1510725207
CXYW01000007
Bacillota
Niameybacter massiliensis mt14 [CXYW]
10956
10871
-
Leu
TAA
[ENA]
¡û
>W1510725234
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
3377182
3377097
-
Leu
TAA
[ENA]
¡û
>W1510725270
CXYW01000012
Bacillota
Niameybacter massiliensis mt14 [CXYW]
1793640
1793555
-
Leu
TAA
[ENA]
¡û
>W11125064
ADVF01000020
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
17200
17285
+
Leu
TAA
[ENA]
¡û
>W11125074
ADVF01000028
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
15855
15940
+
Leu
TAA
[ENA]
¡û
>W11125126
ADVF01000102
Bacillota
Cellulosilyticum lentocellum DSM 5427 [ADVF]
674
759
+
Leu
TAA
[ENA]
¡û
>W1610046318
BBCG01000028
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
26989
26906
-
Leu
TAA
[ENA]
¡û
>W1610046339
BBCG01000077
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
11793
11708
-
Leu
TAA
[ENA]
¡û
>W1610046353
BBCG01000119
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
131
46
-
Leu
TAA
[ENA]
¡û
>W1710043114
BBCG01000028
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
26989
26906
-
Leu
TAA
[ENA]
¡û
>W1710043135
BBCG01000077
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
11793
11708
-
Leu
TAA
[ENA]
¡û
>W1710043149
BBCG01000119
Bacillota
Cellulosilyticum ruminicola JCM 14822 [BBCG]
131
46
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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