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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.656971 (78 seq.)
>W1710853045
LLWH01000063
Gammaproteobacteria
Pseudomonas endophytica [LLWH]
4151
4225
+
Gln
TTG
[ENA]
¡û
>W1710853110
LLWI01000073
Gammaproteobacteria
Pseudomonas sp. TAD18 [LLWI]
103336
103262
-
Gln
TTG
[ENA]
¡û
>W1710853164
LLWJ01000062
Gammaproteobacteria
Pseudomonas sp. TAA207 [LLWJ]
103370
103296
-
Gln
TTG
[ENA]
¡û
>W1711617355
MPAK01000001
Gammaproteobacteria
Pseudomonas sp. C9 [MPAK]
5101979
5102053
+
Gln
TTG
[ENA]
¡û
>W1711625977
MPJC01000008
Gammaproteobacteria
Pseudomonas versuta A4R1.5 [MPJC]
490093
490019
-
Gln
TTG
[ENA]
¡û
>W1711626054
MPJD01000040
Gammaproteobacteria
Pseudomonas versuta A4R1.12 [MPJD]
111516
111442
-
Gln
TTG
[ENA]
¡û
>W1711783710
MVOL01000021
Gammaproteobacteria
Pseudomonas sp. MF4836 [MVOL]
79344
79270
-
Gln
TTG
[ENA]
¡û
>C171116174
CP021132
Gammaproteobacteria
Pseudomonas fragi NMC25 [CP021132]
2916853
2916779
-
Gln
TTG
-
¡û
>W131091406
AOGS01000039
Gammaproteobacteria
Pseudomonas sp. Lz4W [AOGS]
279055
278981
-
Gln
TTG
[ENA]
¡û
>W141079517
ATLP01000105
Gammaproteobacteria
Pseudomonas sp. CF161 [ATLP]
4549
4475
-
Gln
TTG
[ENA]
¡û
>W141079582
ATLR01000007
Gammaproteobacteria
Pseudomonas psychrophila CF149 [ATLR]
30914
30840
-
Gln
TTG
[ENA]
¡û
>W141217846
AZVV01000013
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I12 [AZVV]
177182
177108
-
Gln
TTG
[ENA]
¡û
>WENV170559754
CXWL01146741
[CXWL] groundwater metagenome; biofilm material
313
387
+
Gln
TTG
[ENA]
¢þ
>WENV170700576
LIDZ01015607
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
61276
61350
+
Gln
TTG
[ENA]
¢þ
>C181025622
CP017432
Gammaproteobacteria
Pseudomonas sp. Lz4W [CP017432]
1871401
1871327
-
Gln
TTG
-
¡û
>C191012856
CP016849
Gammaproteobacteria
Pseudomonas sp. TMW 2.1634 [CP016849]
1661260
1661186
-
Gln
TTG
-
¡û
>C191051125
CP027218
Gammaproteobacteria
Pseudomonas sp. DTU12.3 [CP027218]
3637851
3637777
-
Gln
TTG
-
¡û
>W1910767464
MOBI01000020
Gammaproteobacteria
Pseudomonas brassicacearum 37D10 [MOBI]
334595
334521
-
Gln
TTG
[ENA]
¡û
>W1910767546
MOBK01000001
Gammaproteobacteria
Pseudomonas brassicacearum 38D7 [MOBK]
698230
698156
-
Gln
TTG
[ENA]
¡û
>W1910767830
MOBP01000002
Gammaproteobacteria
Pseudomonas frederiksbergensis 39A2 [MOBP]
81680
81606
-
Gln
TTG
[ENA]
¡û
>W1910767913
MOBQ01000022
Gammaproteobacteria
Pseudomonas frederiksbergensis 37A10 [MOBQ]
56853
56927
+
Gln
TTG
[ENA]
¡û
>W1910767973
MOBR01000023
Gammaproteobacteria
Pseudomonas frederiksbergensis 38F7 [MOBR]
59019
58945
-
Gln
TTG
[ENA]
¡û
>W1911176067
NQKK01000034
Gammaproteobacteria
Pseudomonas fragi F1821 [NQKK]
29304
29230
-
Gln
TTG
[ENA]
¡û
>W1911176108
NQKL01000008
Gammaproteobacteria
Pseudomonas fragi F1820 [NQKL]
269693
269619
-
Gln
TTG
[ENA]
¡û
>W1911176202
NQKM01000026
Gammaproteobacteria
Pseudomonas fragi F1818 [NQKM]
22702
22628
-
Gln
TTG
[ENA]
¡û
>W1911176240
NQKN01000002
Gammaproteobacteria
Pseudomonas fragi F1816 [NQKN]
83744
83818
+
Gln
TTG
[ENA]
¡û
>W1911176304
NQKO01000001
Gammaproteobacteria
Pseudomonas fragi F1815 [NQKO]
19437
19511
+
Gln
TTG
[ENA]
¡û
>W1911176391
NQKP01000005
Gammaproteobacteria
Pseudomonas fragi F1813 [NQKP]
70558
70632
+
Gln
TTG
[ENA]
¡û
>W1911176459
NQKQ01000009
Gammaproteobacteria
Pseudomonas fragi F1801 [NQKQ]
12203
12277
+
Gln
TTG
[ENA]
¡û
>W1911176526
NQKR01000007
Gammaproteobacteria
Pseudomonas fragi F1794 [NQKR]
83976
84050
+
Gln
TTG
[ENA]
¡û
>W1911176583
NQKS01000002
Gammaproteobacteria
Pseudomonas fragi F1793 [NQKS]
83955
84029
+
Gln
TTG
[ENA]
¡û
>W1911176660
NQKT01000008
Gammaproteobacteria
Pseudomonas fragi F1792 [NQKT]
83804
83878
+
Gln
TTG
[ENA]
¡û
>W1911176715
NQKU01000001
Gammaproteobacteria
Pseudomonas fragi F1791 [NQKU]
22874
22948
+
Gln
TTG
[ENA]
¡û
>W1911176782
NQKV01000001
Gammaproteobacteria
Pseudomonas fragi F1786 [NQKV]
347704
347778
+
Gln
TTG
[ENA]
¡û
>W1810209801
POGY01000003
Gammaproteobacteria
Pseudomonas sp. FW306-02-F08-AA [POGY]
74335
74261
-
Gln
TTG
[ENA]
¡û
>W1810209860
POGZ01000004
Gammaproteobacteria
Pseudomonas sp. FW306-02-F02-AA [POGZ]
74335
74261
-
Gln
TTG
[ENA]
¡û
>W1810209918
POHA01000003
Gammaproteobacteria
Pseudomonas sp. FW306-02-F02-AB [POHA]
57785
57711
-
Gln
TTG
[ENA]
¡û
>W1810209976
POHB01000004
Gammaproteobacteria
Pseudomonas sp. FW306-02-H06C [POHB]
74335
74261
-
Gln
TTG
[ENA]
¡û
>W1810210031
POHC01000003
Gammaproteobacteria
Pseudomonas sp. FW306-02-F04-BA [POHC]
74335
74261
-
Gln
TTG
[ENA]
¡û
>W1810210087
POHD01000003
Gammaproteobacteria
Pseudomonas sp. FW306-2-11AC [POHD]
74335
74261
-
Gln
TTG
[ENA]
¡û
>W1810210138
POHE01000002
Gammaproteobacteria
Pseudomonas sp. FW306-02-H05-AA [POHE]
74335
74261
-
Gln
TTG
[ENA]
¡û
>W1810210199
POHF01000003
Gammaproteobacteria
Pseudomonas sp. FW306-02-F04-AA [POHF]
74335
74261
-
Gln
TTG
[ENA]
¡û
>W1810210255
POHG01000002
Gammaproteobacteria
Pseudomonas sp. FW306-02-H05-BA [POHG]
74335
74261
-
Gln
TTG
[ENA]
¡û
>W1810210313
POHH01000005
Gammaproteobacteria
Pseudomonas sp. FW306-2-11AB [POHH]
74335
74261
-
Gln
TTG
[ENA]
¡û
>W1810210363
POHI01000001
Gammaproteobacteria
Pseudomonas sp. FW306-02-H06B [POHI]
74335
74261
-
Gln
TTG
[ENA]
¡û
>W1810210426
POHJ01000003
Gammaproteobacteria
Pseudomonas sp. FW306-2-11BA [POHJ]
74335
74261
-
Gln
TTG
[ENA]
¡û
>W1810210481
POHK01000004
Gammaproteobacteria
Pseudomonas sp. FW306-2-11AA [POHK]
217209
217283
+
Gln
TTG
[ENA]
¡û
>W1810210539
POHL01000003
Gammaproteobacteria
Pseudomonas sp. FW300-N1A5 [POHL]
74335
74261
-
Gln
TTG
[ENA]
¡û
>W1810210589
POHM01000003
Gammaproteobacteria
Pseudomonas sp. FW306-2-11AD [POHM]
74335
74261
-
Gln
TTG
[ENA]
¡û
>W1810210640
POHN01000002
Gammaproteobacteria
Pseudomonas sp. FW306-02-H05-AB [POHN]
74335
74261
-
Gln
TTG
[ENA]
¡û
>W1810210695
POHO01000002
Gammaproteobacteria
Pseudomonas sp. GW456-11-11-14-LB1 [POHO]
74335
74261
-
Gln
TTG
[ENA]
¡û
>W1810239171
PPSE01000019
Gammaproteobacteria
Pseudomonas sp. GW456-R21 [PPSE]
61657
61583
-
Gln
TTG
[ENA]
¡û
>W1810239359
PPSH01000032
Gammaproteobacteria
Pseudomonas sp. GW460-R15 [PPSH]
56662
56588
-
Gln
TTG
[ENA]
¡û
>W1810365929
PVUM01000010
Gammaproteobacteria
Pseudomonas fragi 21197/1 [PVUM]
42197
42271
+
Gln
TTG
[ENA]
¡û
>W1810596713
QGGS01000012
Gammaproteobacteria
Pseudomonas sp. OV226 [QGGS]
108202
108128
-
Gln
TTG
[ENA]
¡û
>SRA1014255
SRR023845.60319
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
128
202
+
Gln
TTG
[SRA]
>C151097157
CP012676
Gammaproteobacteria
Pseudomonas versuta L10.10 [CP012676]
1197839
1197765
-
Gln
TTG
-
¡û
>W1511530921
JYKZ01000006
Gammaproteobacteria
Pseudomonas psychrophila DSM 17535 [JYKZ]
271766
271840
+
Gln
TTG
[ENA]
¡û
>W1511531141
JYLD01000005
Gammaproteobacteria
Pseudomonas helleri DSM 29165 [JYLD]
146757
146683
-
Gln
TTG
[ENA]
¡û
>W1511531206
JYLE01000021
Gammaproteobacteria
Pseudomonas helleri DSM 28141 [JYLE]
48922
48996
+
Gln
TTG
[ENA]
¡û
>W1511531286
JYLF01000008
Gammaproteobacteria
Pseudomonas weihenstephanensis DSM 29166 [JYLF]
191158
191232
+
Gln
TTG
[ENA]
¡û
>W1511531299
JYLG01000001
Gammaproteobacteria
Pseudomonas weihenstephanensis DSM 28140 [JYLG]
614199
614273
+
Gln
TTG
[ENA]
¡û
>W1511563547
LACE01000011
Gammaproteobacteria
Pseudomonas fluorescens C1 [LACE]
148850
148776
-
Gln
TTG
[ENA]
¡û
>W1511591677
LBHT01000044
Gammaproteobacteria
Pseudomonas psychrophila RGCB 166 [LBHT]
5207
5133
-
Gln
TTG
[ENA]
¡û
>W11169812
AFOY01000013
Gammaproteobacteria
Pseudomonas fluorescens HK44 [AFOY]
57781
57855
+
Gln
TTG
[ENA]
¡û
>C161045935
CP012830
Gammaproteobacteria
Pseudomonas fluorescens FW300-N2E3 [CP012830]
6144777
6144703
-
Gln
TTG
[Ensembl]
¡û
>C161061466
CP013861
Gammaproteobacteria
Pseudomonas fragi P121 [CP013861]
1902215
1902141
-
Gln
TTG
[Ensembl]
¡û
>C161106561
LN854573
Gammaproteobacteria
Pseudomonas sp. URMO17WK12:I11 [LN854573]
5554018
5554092
+
Gln
TTG
-
¡û
>W121044704
AHZX01000113
Gammaproteobacteria
Pseudomonas fragi B25 [AHZX]
1144
1070
-
Gln
TTG
[ENA]
¡û
>W121044763
AHZY01000025
Gammaproteobacteria
Pseudomonas fragi A22 [AHZY]
9436
9510
+
Gln
TTG
[ENA]
¡û
>W121086134
AKJS01000011
Gammaproteobacteria
Pseudomonas sp. GM21 [AKJS]
17134
17060
-
Gln
TTG
[ENA]
¡û
>W121111170
ALJC01000115
Gammaproteobacteria
Pseudomonas psychrophila HA-4 [ALJC]
18666
18740
+
Gln
TTG
[ENA]
¡û
>W1610634100
LIRD01000002
Gammaproteobacteria
Pseudomonas nunensis In5 [LIRD]
2193506
2193432
-
Gln
TTG
[ENA]
¡û
>W1610716169
LLWH01000063
Gammaproteobacteria
Pseudomonas endophytica [LLWH]
4151
4225
+
Gln
TTG
[ENA]
¡û
>W1610716234
LLWI01000073
Gammaproteobacteria
Pseudomonas sp. TAD18 [LLWI]
103336
103262
-
Gln
TTG
[ENA]
¡û
>W1610716288
LLWJ01000062
Gammaproteobacteria
Pseudomonas sp. TAA207 [LLWJ]
103370
103296
-
Gln
TTG
[ENA]
¡û
>W1710075904
BDAB01000014
Gammaproteobacteria
Pseudomonas fragi NBRC 3458 [BDAB]
164577
164651
+
Gln
TTG
[ENA]
¡û
>W1710768477
LIRD01000002
Gammaproteobacteria
Pseudomonas nunensis In5 [LIRD]
2193506
2193432
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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