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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.65703 (75 seq.)
>W1711510644
MLBG01000098
Thermodesulfobacteriota
Desulfovibrio sp. DV [MLBG]
10845
10931
+
Leu
CAG
[ENA]
¡û
>W1712038679
NFJC01000013
Thermodesulfobacteriota
Desulfovibrio sp. An276 [NFJC]
22033
22119
+
Leu
CAG
[ENA]
¡û
>W131215413
ATUZ01000013
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans DSM 642 [ATUZ]
4195
4109
-
Leu
CAG
[ENA]
¡û
>WENV180214338
OBAO01126756
[OBAO] human gut metagenome; human gut
160
243
+
Leu
CAG
[ENA]
¢þ
>WENV180276548
OBHU01036261
[OBHU] human gut metagenome; feces
160
74
-
Leu
CAG
[ENA]
¢þ
>W141027997
ALAO01000261
Thermodesulfobacteriota
Solidesulfovibrio magneticus str. Maddingley MBC34 [ALAO]
12416
12330
-
Leu
CAG
[ENA]
¡û
>WENV180710953
ODFM01024372
[ODFM] human metagenome; G_DNA_Stool
810
896
+
Leu
CAG
[ENA]
¢þ
>WENV180850785
ODKV01011781
[ODKV] human metagenome; G_DNA_Stool
3826
3740
-
Leu
CAG
[ENA]
¢þ
>WENV180962315
ODUN01009332
[ODUN] human metagenome; G_DNA_Stool
440
526
+
Leu
CAG
[ENA]
¢þ
>WENV181024653
ODWX01138848
[ODWX] human metagenome; G_DNA_Stool
128
42
-
Leu
CAG
[ENA]
¢þ
>WENV181149617
OEHT01144671
[OEHT] human metagenome; G_DNA_Stool
129
215
+
Leu
CAG
[ENA]
¢þ
>WENV181239926
OFFD01027465
[OFFD] mouse gut metagenome; faeces
165
251
+
Leu
CAG
[ENA]
¢þ
>WENV181240810
OFFE01009369
[OFFE] mouse gut metagenome; faeces
84
170
+
Leu
CAG
[ENA]
¢þ
>WENV181241923
OFFF01013005
[OFFF] mouse gut metagenome; faeces
1763
1677
-
Leu
CAG
[ENA]
¢þ
>WENV181243130
OFFG01017215
[OFFG] mouse gut metagenome; faeces
1953
1867
-
Leu
CAG
[ENA]
¢þ
>WENV181246413
OFFJ01053720
[OFFJ] mouse gut metagenome; faeces
776
690
-
Leu
CAG
[ENA]
¢þ
>WENV181251422
OFFO01007510
[OFFO] mouse gut metagenome; faeces
2352
2266
-
Leu
CAG
[ENA]
¢þ
>WENV181253756
OFFQ01044437
[OFFQ] mouse gut metagenome; faeces
143
229
+
Leu
CAG
[ENA]
¢þ
>WENV181256595
OFFT01011571
[OFFT] mouse gut metagenome; faeces
459
545
+
Leu
CAG
[ENA]
¢þ
>WENV181257819
OFFU01006017
[OFFU] mouse gut metagenome; faeces
238
324
+
Leu
CAG
[ENA]
¢þ
>WENV181262918
OFFY01072354
[OFFY] mouse gut metagenome; faeces
548
462
-
Leu
CAG
[ENA]
¢þ
>WENV181263674
OFFZ01008549
[OFFZ] mouse gut metagenome; faeces
238
324
+
Leu
CAG
[ENA]
¢þ
>WENV181266077
OFGB01011316
[OFGB] mouse gut metagenome; faeces
1497
1583
+
Leu
CAG
[ENA]
¢þ
>WENV181274087
OFGH01049684
[OFGH] mouse gut metagenome; faeces
79
165
+
Leu
CAG
[ENA]
¢þ
>WENV181278571
OFGM01003929
[OFGM] mouse gut metagenome; faeces
5338
5252
-
Leu
CAG
[ENA]
¢þ
>WENV181281398
OFGO01059122
[OFGO] mouse gut metagenome; faeces
487
401
-
Leu
CAG
[ENA]
¢þ
>WENV181282709
OFGP01067208
[OFGP] mouse gut metagenome; faeces
115
201
+
Leu
CAG
[ENA]
¢þ
>WENV181291522
OFHB01042047
[OFHB] mouse gut metagenome; faeces
135
221
+
Leu
CAG
[ENA]
¢þ
>WENV181301012
OFHN01020764
[OFHN] mouse gut metagenome; faeces
102
188
+
Leu
CAG
[ENA]
¢þ
>WENV181302457
OFHO01026713
[OFHO] mouse gut metagenome; faeces
2
88
+
Leu
CAG
[ENA]
¢þ
>WENV181442166
OGDN01070599
[OGDN] human gut metagenome; human gut
647
561
-
Leu
CAG
[ENA]
¢þ
>WENV181525106
OGHJ01000011
[OGHJ] metagenome; Human gut stool
227545
227459
-
Leu
CAG
[ENA]
¢þ
>WENV181741101
OGQJ01064339
[OGQJ] human gut metagenome; faeces
700
614
-
Leu
CAG
[ENA]
¢þ
>WENV181890986
OGXO01003359
[OGXO] human gut metagenome; faeces
995
1081
+
Leu
CAG
[ENA]
¢þ
>WENV181915495
OGYF01007956
[OGYF] human gut metagenome; faeces
4900
4814
-
Leu
CAG
[ENA]
¢þ
>WENV181948041
OGZE01000251
[OGZE] human gut metagenome; faeces
27813
27727
-
Leu
CAG
[ENA]
¢þ
>WENV181995530
OHAT01003882
[OHAT] human gut metagenome; faeces
9064
8978
-
Leu
CAG
[ENA]
¢þ
>WENV182306433
OHXC01036817
[OHXC] human gut metagenome; feces
312
398
+
Leu
CAG
[ENA]
¢þ
>WENV182596180
OJIY01002368
[OJIY] metagenome; faeces
33
119
+
Leu
CAG
[ENA]
¢þ
>WENV182664832
OJMP01023998
[OJMP] human gut metagenome; feces
413
499
+
Leu
CAG
[ENA]
¢þ
>WENV182693829
OJOH01007958
[OJOH] human gut metagenome; stool sample
1376
1462
+
Leu
CAG
[ENA]
¢þ
>WENV182725045
OJPS01070726
[OJPS] human gut metagenome; stool sample
119
33
-
Leu
CAG
[ENA]
¢þ
>WENV182728415
OJPW01006028
[OJPW] human gut metagenome; stool sample
3019
2933
-
Leu
CAG
[ENA]
¢þ
>WENV182740303
OJQL01006979
[OJQL] human gut metagenome; stool sample
3529
3443
-
Leu
CAG
[ENA]
¢þ
>W141279142
JAGC01000003
Thermodesulfobacteriota
Solidesulfovibrio magneticus magneticus IFRC170 [JAGC]
1916066
1916152
+
Leu
CAG
[ENA]
¡û
>WENV182882991
OKSB01002871
[OKSB] human gut metagenome; faeces
7572
7658
+
Leu
CAG
[ENA]
¢þ
>WENV183028185
OLFV01001238
[OLFV] human gut metagenome; faeces
20657
20743
+
Leu
CAG
[ENA]
¢þ
>WENV183080851
OLIY01018144
[OLIY] human gut metagenome; human gut
1335
1249
-
Leu
CAG
[ENA]
¢þ
>WENV183396635
OLZI01049251
[OLZI] human gut metagenome; feces
661
575
-
Leu
CAG
[ENA]
¢þ
>WENV183492977
OMGI01002894
[OMGI] human gut metagenome; human gut
347
261
-
Leu
CAG
[ENA]
¢þ
>WENV183501393
OMGS01000150
[OMGS] human gut metagenome; human gut
31975
31889
-
Leu
CAG
[ENA]
¢þ
>WENV183581355
OOCN01026250
[OOCN] human gut metagenome; human gut
574
660
+
Leu
CAG
[ENA]
¢þ
>WENV170636366
JFBN01196582
[JFBN] chicken gut metagenome; ceca of Broiler chicken
138
52
-
Leu
CAG
[ENA]
¢þ
>C181081059
CP023415
Thermodesulfobacteriota
Desulfovibrio sp. G11 [CP023415]
2843388
2843474
+
Leu
CAG
-
¡û
>C191045066
CP026538
Thermodesulfobacteriota
Solidesulfovibrio carbinolicus DSM 3852 [CP026538]
3943549
3943463
-
Leu
CAG
-
¡û
>C191149692
CP036295
Thermodesulfobacteriota
Desulfovibrio desulfuricans IC1 [CP036295]
2309751
2309837
+
Leu
CAG
-
¡û
>W09118210
ACCT01000001
Thermodesulfobacteriota
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 [ACCT]
881910
881824
-
Leu
CAG
[ENA]
¡û
>W141731356
JNJA01000007
Thermodesulfobacteriota
Solidesulfovibrio alcoholivorans DSM 5433 [JNJA]
80669
80583
-
Leu
CAG
[ENA]
¡û
>W1910020660
BDUJ01000001
Thermodesulfobacteriota
Nitratidesulfovibrio sp. HK-II HK-II [BDUJ]
474617
474531
-
Leu
CAG
[ENA]
¡û
>W1910020682
BDUJ01000003
Thermodesulfobacteriota
Nitratidesulfovibrio sp. HK-II HK-II [BDUJ]
362876
362962
+
Leu
CAG
[ENA]
¡û
>C09104090
AP010904
Thermodesulfobacteriota
Solidesulfovibrio magneticus RS-1 [AP010904]
692791
692877
+
Leu
CAG
[Ensembl]
¡û
>C09104382
CP001197
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris [CP001197]
2159345
2159431
+
Leu
CAG
[Ensembl]
¡û
>W10111725
ADDR01000231
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
28209
28295
+
Leu
CAG
[ENA]
¡û
>W10112662
ADFE01000019
Thermodesulfobacteriota
Solidesulfovibrio carbinoliphilus FW1012B [ADFE]
62465
62551
+
Leu
CAG
[ENA]
¡û
>W10126121
AECZ01000012
Thermodesulfobacteriota
Solidesulfovibrio fructosivorans JJ [AECZ]
8202
8288
+
Leu
CAG
[ENA]
¡û
>W11107000
ACWM01000018
Thermodesulfobacteriota
Desulfovibrio sp. 6_1_46AFAA [ACWM]
86612
86526
-
Leu
CAG
[ENA]
¡û
>W11114652
ADDR01000231
Thermodesulfobacteriota
Desulfovibrio sp. 3_1_syn3 [ADDR]
28209
28295
+
Leu
CAG
[ENA]
¡û
>W11115893
ADFE02000003
Thermodesulfobacteriota
Solidesulfovibrio carbinoliphilus FW1012B [ADFE]
62465
62551
+
Leu
CAG
[ENA]
¡û
>W1511365637
JSEH01000008
Thermodesulfobacteriota
Desulfovibrio sp. TomC [JSEH]
110858
110772
-
Leu
CAG
[ENA]
¡û
>W11133382
AECZ01000012
Thermodesulfobacteriota
Solidesulfovibrio fructosivorans JJ [AECZ]
8202
8288
+
Leu
CAG
[ENA]
¡û
>W11178809
AGFG01000028
Thermodesulfobacteriota
Desulfovibrio sp. A2 [AGFG]
50485
50571
+
Leu
CAG
[ENA]
¡û
>W11178824
AGFG01000039
Thermodesulfobacteriota
Desulfovibrio sp. A2 [AGFG]
59656
59742
+
Leu
CAG
[ENA]
¡û
>C161068972
CP014229
Thermodesulfobacteriota
Desulfovibrio fairfieldensis CCUG 45958 [CP014229]
803332
803418
+
Leu
CAG
[Ensembl]
¡û
>W121036503
AHMC01000029
Thermodesulfobacteriota
Desulfovibrio sp. U5L [AHMC]
83295
83209
-
Leu
CAG
[ENA]
¡û
>W1710579883
FPIW01000064
Thermodesulfobacteriota
Desulfovibrio desulfuricans [FPIW]
14688
14602
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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