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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.657271 (48 seq.)
>W1711662038
MQTZ01000028
Cyanobacteriota
Leptolyngbya sp. 'hensonii' 'hensonii' [MQTZ]
7279
7208
-
Asn
GTT
[ENA]
¡û
>W1711666596
MRCC01000016
Cyanobacteriota
Chroogloeocystis siderophila 5.2 s.c.1 [MRCC]
37131
37060
-
Asn
GTT
[ENA]
¡û
>W1711666769
MRCG01000011
Cyanobacteriota
Phormidium tenue NIES-30 [MRCG]
68042
67971
-
Asn
GTT
[ENA]
¡û
>W1712017607
NETF01000072
Cyanobacteriota
unicellular cyanobacterium SU3 [NETF]
75715
75644
-
Asn
GTT
[ENA]
¡û
>W131036430
ALVP01000037
Cyanobacteriota
Nodosilinea nodulosa PCC 7104 [ALVP]
83242
83313
+
Asn
GTT
[ENA]
¡û
>W131036466
ALVR01000007
Cyanobacteriota
Spirulina subsalsa PCC 9445 [ALVR]
1230768
1230839
+
Asn
GTT
[ENA]
¡û
>w023433
AAXW01000001
Cyanobacteriota
Crocosphaera chwakensis CCY0110 [AAXW]
142319
142393
+
Asn
GTT
[ENA]
¡û
>w003623
AADV02000154
Cyanobacteriota
Crocosphaera watsonii WH 8501 [AADV]
6264
6190
-
Asn
GTT
[ENA]
¡û
>W141038465
ALVV02000057
Cyanobacteriota
Leptolyngbya sp. PCC 6406 [ALVV]
19218
19145
-
Asn
GTT
[ENA]
¡û
>W08008949
ABLR01000014
Cyanobacteriota
Rippkaea orientalis PCC 8801 [ABLR]
18316
18387
+
Asn
GTT
[ENA]
¡û
>W08009364
ABOY01000008
Cyanobacteriota
Gloeothece citriformis PCC 7424 [ABOY]
56814
56743
-
Asn
GTT
[ENA]
¡û
>W08011337
ABVE01000001
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [ABVE]
1186250
1186321
+
Asn
GTT
[ENA]
¡û
>W08011507
ABVI01000011
Cyanobacteriota
Rippkaea orientalis PCC 8802 [ABVI]
184421
184350
-
Asn
GTT
[ENA]
¡û
>WENV181414114
OGCL01000020
[OGCL] hot springs metagenome; Hot spring water
131795
131866
+
Asn
GTT
[ENA]
¢þ
>W141242763
CAIS01000773
Cyanobacteriota
Richelia intracellularis HM01 [CAIS]
4286
4213
-
Asn
GTT
[ENA]
¡û
>W141242891
CAIY01000084
Cyanobacteriota
Richelia intracellularis HH01 [CAIY]
6147
6074
-
Asn
GTT
[ENA]
¡û
>W141247014
CAQK01000397
Cyanobacteriota
Crocosphaera watsonii WH 8502 [CAQK]
25060
24989
-
Asn
GTT
[ENA]
¡û
>W141247033
CAQL01000036
Cyanobacteriota
Crocosphaera watsonii WH 0005 [CAQL]
4687
4758
+
Asn
GTT
[ENA]
¡û
>W141247102
CAQM01000853
Cyanobacteriota
Crocosphaera watsonii WH 0401 [CAQM]
402
473
+
Asn
GTT
[ENA]
¡û
>W141247134
CAQN01000900
Cyanobacteriota
Crocosphaera watsonii WH 0402 [CAQN]
8056
8127
+
Asn
GTT
[ENA]
¡û
>WENV183748031
PPFU01007678
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1427
1498
+
Asn
GTT
[ENA]
¢þ
>WENV170232660
CEQI01087070
[CEQI] marine metagenome genome assembly TARA_076_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
338
267
-
Asn
GTT
[ENA]
¢þ
>WENV170290883
CESA01062833
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
56876
56805
-
Asn
GTT
[ENA]
¢þ
>WENV170300592
CESG01137665
[CESG] marine metagenome genome assembly TARA_078_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
728
657
-
Asn
GTT
[ENA]
¢þ
>WENV170335959
CESZ01110143
[CESZ] marine metagenome genome assembly TARA_078_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3414
3485
+
Asn
GTT
[ENA]
¢þ
>WENV170821437
MDSY01022251
[MDSY] marine metagenome; seawater
77460
77531
+
Asn
GTT
[ENA]
¢þ
>W141810153
JPSP01000004
Cyanobacteriota
Candidatus Atelocyanobacterium thalassa thalassa isolate SIO64986 [JPSP]
45412
45341
-
Asn
GTT
[ENA]
¡û
>W1910018082
BDQK01000017
Cyanobacteriota
Aphanothece sacrum FPU1 [BDQK]
223169
223240
+
Asn
GTT
[ENA]
¡û
>W1910018099
BDQL01000014
Cyanobacteriota
Aphanothece sacrum FPU3 [BDQL]
50722
50651
-
Asn
GTT
[ENA]
¡û
>C09103530
CP001291
Cyanobacteriota
Gloeothece citriformis PCC 7424 [CP001291]
771529
771600
+
Asn
GTT
[Ensembl]
¡û
>C09103642
CP001287
Cyanobacteriota
Rippkaea orientalis PCC 8801 [CP001287]
2016342
2016271
-
Asn
GTT
[Ensembl]
¡û
>W1910502531
FYBH01000266
Cyanobacteriota
Calothrix rhizosoleniae SC01 [FYBH]
5463
5536
+
Asn
GTT
[ENA]
¡û
>W1910812561
MVDI01000011
Cyanobacteriota
Chroococcidiopsis sp. TS-821 [MVDI]
2402
2473
+
Asn
GTT
[ENA]
¡û
>CHL090100349
AF166114
Viridiplantae
Mesostigma viride
95679
95750
+
Asn
GTT
[ENA]
¡û
>W1810076197
PEIG01000003
Cyanobacteriota
Gloeocapsopsis sp. IPPAS B-1203 IPPAS B-1203 [PEIG]
469422
469493
+
Asn
GTT
[ENA]
¡û
>W1810271985
PRLH01000192
Cyanobacteriota
Cyanothece sp. BG0011 [PRLH]
33052
32981
-
Asn
GTT
[ENA]
¡û
>W1810296718
PTJN01000089
Cyanobacteriota
Gloeocapsopsis dulcis AAB1 [PTJN]
2330
2401
+
Asn
GTT
[ENA]
¡û
>W1810398638
PYER01000180
Cyanobacteriota
filamentous cyanobacterium CCT1 [PYER]
10089
10160
+
Asn
GTT
[ENA]
¡û
>W1810400255
PYFY01000293
Cyanobacteriota
filamentous cyanobacterium CCP4 [PYFY]
4284
4355
+
Asn
GTT
[ENA]
¡û
>W1810401290
PYGV01000128
Cyanobacteriota
filamentous cyanobacterium CCP3 [PYGV]
11083
11012
-
Asn
GTT
[ENA]
¡û
>C10104734
CP001701
Cyanobacteriota
Rippkaea orientalis [CP001701]
1986621
1986550
-
Asn
GTT
[Ensembl]
¡û
>C10114713
CP001842
Cyanobacteriota
Candidatus Atelocyanobacterium thalassa isolate ALOHA [CP001842]
1236382
1236453
+
Asn
GTT
[Ensembl]
¡û
>C11106743
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
1708090
1708019
-
Asn
GTT
[Ensembl]
¡û
>C11106787
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
1708090
1708019
-
Asn
GTT
[Ensembl]
¡û
>W1511324022
JQFA01000004
Cyanobacteriota
Leptolyngbya sp. KIOST-1 [JQFA]
843309
843380
+
Asn
GTT
[ENA]
¡û
>W121002197
AESD01000773
Cyanobacteriota
Crocosphaera watsonii WH 0003 [AESD]
609
538
-
Asn
GTT
[ENA]
¡û
>C131004964
CP003646
Cyanobacteriota
Gloeocapsa sp. PCC 7428 [CP003646]
127560
127631
+
Asn
GTT
[Ensembl]
¡û
>W1710005650
ALVQ01000011
Cyanobacteriota
Spirulina major PCC 6313 [ALVQ]
2281464
2281535
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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