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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.657785 (41 seq.)
>W1710797718
LJTD01000002
Gammaproteobacteria
Cobetia sp. UCD-24C [LJTD]
21450
21524
+
Gln
TTG
[ENA]
¡û
>W1710797721
LJTD01000002
Gammaproteobacteria
Cobetia sp. UCD-24C [LJTD]
21806
21880
+
Gln
TTG
[ENA]
¡û
>W1711957923
NBVS01000003
Gammaproteobacteria
Cobetia sp. QF-1 [NBVS]
451191
451117
-
Gln
TTG
[ENA]
¡û
>W1711957926
NBVS01000003
Gammaproteobacteria
Cobetia sp. QF-1 [NBVS]
450827
450753
-
Gln
TTG
[ENA]
¡û
>W1711959271
NBYR01000002
Gammaproteobacteria
Halomonas sp. CSM-2 [NBYR]
152790
152716
-
Gln
TTG
[ENA]
¡û
>C171057412
CP017114
Gammaproteobacteria
Cobetia marina JCM 21022 [CP017114]
3921734
3921660
-
Gln
TTG
-
¡û
>C171057415
CP017114
Gammaproteobacteria
Cobetia marina JCM 21022 [CP017114]
3921378
3921304
-
Gln
TTG
-
¡û
>C171117516
CP021323
Gammaproteobacteria
Kushneria konosiri X49 [CP021323]
863788
863714
-
Gln
TTG
-
¡û
>C171117980
CP021358
Gammaproteobacteria
Kushneria marisflavi SW32 [CP021358]
2435620
2435694
+
Gln
TTG
-
¡û
>WENV170024057
BCQL01017407
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
672
746
+
Gln
TTG
[ENA]
¢þ
>WENV170024060
BCQL01017407
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1028
1102
+
Gln
TTG
[ENA]
¢þ
>WENV170136130
CENV01004280
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1825
1899
+
Gln
TTG
[ENA]
¢þ
>WENV170436316
CEUT01040704
[CEUT] marine metagenome genome assembly TARA_125_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
732
806
+
Gln
TTG
[ENA]
¢þ
>W141425961
JEMF01000089
Gammaproteobacteria
Cobetia crustatorum [JEMF]
562
488
-
Gln
TTG
[ENA]
¡û
>W141425964
JEMF01000089
Gammaproteobacteria
Cobetia crustatorum [JEMF]
198
124
-
Gln
TTG
[ENA]
¡û
>WENV170823724
MDSY01062663
[MDSY] marine metagenome; seawater
1928
1854
-
Gln
TTG
[ENA]
¢þ
>WENV170823727
MDSY01062663
[MDSY] marine metagenome; seawater
1572
1498
-
Gln
TTG
[ENA]
¢þ
>WENV170927798
MDTG01123084
[MDTG] marine metagenome; seawater
5079
5005
-
Gln
TTG
[ENA]
¢þ
>WENV170927801
MDTG01123084
[MDTG] marine metagenome; seawater
4723
4649
-
Gln
TTG
[ENA]
¢þ
>C181164747
CP028367
Gammaproteobacteria
Halomonas sp. SF2003 [CP028367]
2466269
2466195
-
Gln
TTG
-
¡û
>C181164750
CP028367
Gammaproteobacteria
Halomonas sp. SF2003 [CP028367]
2465913
2465839
-
Gln
TTG
-
¡û
>W141557630
JHVH01000021
Gammaproteobacteria
Halomonas halodenitrificans DSM 735 [JHVH]
34275
34201
-
Gln
TTG
[ENA]
¡û
>W141815598
JQJA01000009
Gammaproteobacteria
Cobetia amphilecti marina [JQJA]
106289
106215
-
Gln
TTG
[ENA]
¡û
>W141815640
JQJA01000048
Gammaproteobacteria
Cobetia amphilecti marina [JQJA]
167
93
-
Gln
TTG
[ENA]
¡û
>W1910184095
BJOH01000035
Gammaproteobacteria
Cobetia marina NBRC 15607 [BJOH]
20424
20350
-
Gln
TTG
[ENA]
¡û
>W1910184098
BJOH01000035
Gammaproteobacteria
Cobetia marina NBRC 15607 [BJOH]
20068
19994
-
Gln
TTG
[ENA]
¡û
>W1910237343
FPLA01000092
Gammaproteobacteria
Cobetia marina MM1IDA2H-1 [FPLA]
20905
20979
+
Gln
TTG
[ENA]
¡û
>W1910237346
FPLA01000092
Gammaproteobacteria
Cobetia marina MM1IDA2H-1 [FPLA]
21261
21335
+
Gln
TTG
[ENA]
¡û
>W1910808591
MUEJ01000076
Gammaproteobacteria
Cobetia sp. MM1IDA2H-1 [MUEJ]
20905
20979
+
Gln
TTG
[ENA]
¡û
>W1910808594
MUEJ01000076
Gammaproteobacteria
Cobetia sp. MM1IDA2H-1 [MUEJ]
21261
21335
+
Gln
TTG
[ENA]
¡û
>W1911245453
NSKB01000006
Gammaproteobacteria
Halomonas salipaludis WRN001 [NSKB]
260446
260372
-
Gln
TTG
[ENA]
¡û
>W1911539905
ONZI01000005
Gammaproteobacteria
Kushneria phyllosphaerae EAod3 [ONZI]
17457
17531
+
Gln
TTG
[ENA]
¡û
>W1810758291
QPIJ01000009
Gammaproteobacteria
Halomonas rituensis TQ8S [QPIJ]
14640
14714
+
Gln
TTG
[ENA]
¡û
>W1810787011
QRDJ01000011
Gammaproteobacteria
Kushneria indalinina DSM 14324 [QRDJ]
17334
17408
+
Gln
TTG
[ENA]
¡û
>W1511053627
JIBT01000016
Gammaproteobacteria
Halomonas sp. PR-M31 [JIBT]
82454
82380
-
Gln
TTG
[ENA]
¡û
>W1511053659
JIBT01000068
Gammaproteobacteria
Halomonas sp. PR-M31 [JIBT]
18411
18485
+
Gln
TTG
[ENA]
¡û
>W1610661675
LJTD01000002
Gammaproteobacteria
Cobetia sp. UCD-24C [LJTD]
21450
21524
+
Gln
TTG
[ENA]
¡û
>W1610661678
LJTD01000002
Gammaproteobacteria
Cobetia sp. UCD-24C [LJTD]
21806
21880
+
Gln
TTG
[ENA]
¡û
>W1710521308
FNGH01000007
Gammaproteobacteria
Halomonas pantelleriensis [FNGH]
108911
108837
-
Gln
TTG
[ENA]
¡û
>W1710523943
FNII01000011
Gammaproteobacteria
Halomonas arcis [FNII]
92132
92206
+
Gln
TTG
[ENA]
¡û
>W1710558532
FOLY01000009
Gammaproteobacteria
Kushneria avicenniae [FOLY]
59841
59767
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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