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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.658261 (40 seq.)
>W1711223293
LXSU01000060
Campylobacterota
Campylobacter ornithocola WBE38 [LXSU]
1098
1172
+
Thr
GGT
[ENA]
¡û
>W1711476677
MJVW01000015
Campylobacterota
Campylobacter lari [MJVW]
23417
23343
-
Thr
GGT
[ENA]
¡û
>W1711476704
MJVX01000014
Campylobacterota
Campylobacter lari [MJVX]
23565
23491
-
Thr
GGT
[ENA]
¡û
>W1711477296
MJWK01000012
Campylobacterota
Campylobacter lari [MJWK]
23354
23280
-
Thr
GGT
[ENA]
¡û
>W1712043062
NFMK01000006
Campylobacterota
Campylobacter jejuni [NFMK]
25592
25518
-
Thr
GGT
[ENA]
¡û
>W1712043143
NFMM01000081
Campylobacterota
Campylobacter jejuni [NFMM]
1109
1183
+
Thr
GGT
[ENA]
¡û
>W1712043782
NFNE01000005
Campylobacterota
Campylobacter jejuni [NFNE]
479887
479961
+
Thr
GGT
[ENA]
¡û
>W1712044731
NFOE01000070
Campylobacterota
Campylobacter jejuni [NFOE]
1118
1192
+
Thr
GGT
[ENA]
¡û
>WENV180116919
OARB01000056
[OARB] human gut metagenome; ENVO:feces
7622
7696
+
Thr
GGT
[ENA]
¢þ
>WENV180117880
OARM01000711
[OARM] human gut metagenome; ENVO:feces
2607
2533
-
Thr
GGT
[ENA]
¢þ
>w005237
AAFK01000002
Campylobacterota
Campylobacter lari RM2100 [AAFK]
318931
319005
+
Thr
GGT
[ENA]
¡û
>WENV180230871
OBCM01015238
[OBCM] human gut metagenome; human gut
407
481
+
Thr
GGT
[ENA]
¢þ
>WENV180403146
OBRR01022973
[OBRR] human gut metagenome; ENVO:feces
444
370
-
Thr
GGT
[ENA]
¢þ
>WENV180562680
OCLB01044548
[OCLB] human gut metagenome; human gut
261
187
-
Thr
GGT
[ENA]
¢þ
>WENV183641590
OQVL01055330
[OQVL] human gut metagenome; human gut
855
781
-
Thr
GGT
[ENA]
¢þ
>WENV183647949
OQVS01004671
[OQVS] human gut metagenome; human gut
4423
4497
+
Thr
GGT
[ENA]
¢þ
>WENV183650479
OQVT01024254
[OQVT] human gut metagenome; human gut
362
436
+
Thr
GGT
[ENA]
¢þ
>WENV183652293
OQVU01028493
[OQVU] human gut metagenome; human gut
279
205
-
Thr
GGT
[ENA]
¢þ
>WENV183657372
OQWI01009536
[OQWI] human gut metagenome; human gut
507
433
-
Thr
GGT
[ENA]
¢þ
>C181062584
CP022347
Campylobacterota
Campylobacter avium LMG 24591 [CP022347]
1109044
1108970
-
Thr
GGT
-
¡û
>C191153577
CP037746
Campylobacterota
Campylobacter volucris 2014D-0083 [CP037746]
1152080
1152006
-
Thr
GGT
-
¡û
>C191211224
LR134471
Campylobacterota
Campylobacter insulaenigrae NCTC12927 [LR134471]
389770
389844
+
Thr
GGT
-
¡û
>C191213197
LR134508
Campylobacterota
Campylobacter lari NCTC11937 [LR134508]
417808
417882
+
Thr
GGT
-
¡û
>C191214513
LR134534
Campylobacterota
Campylobacter insulaenigrae NCTC12928 [LR134534]
559342
559416
+
Thr
GGT
-
¡û
>C09103367
CP000932
Campylobacterota
Campylobacter lari RM2100 RM2100; ATCC BAA-1060D [CP000932]
412697
412771
+
Thr
GGT
[Ensembl]
¡û
>W1910995348
NKYN01000004
Campylobacterota
Campylobacter avium Jun-87 [NKYN]
16954
16880
-
Thr
GGT
[ENA]
¡û
>W1911200197
NREN01000014
Campylobacterota
Campylobacter sp. P255 [NREN]
1172
1246
+
Thr
GGT
[ENA]
¡û
>C151034009
CP007766
Campylobacterota
Campylobacter peloridis LMG 23910 [CP007766]
451648
451722
+
Thr
GGT
[Ensembl]
¡û
>C151034055
CP007769
Campylobacterota
Campylobacter sp. RM16704 [CP007769]
426891
426965
+
Thr
GGT
[Ensembl]
¡û
>C151034101
CP007770
Campylobacterota
Campylobacter insulaenigrae NCTC 12927 [CP007770]
389771
389845
+
Thr
GGT
[Ensembl]
¡û
>C151034143
CP007771
Campylobacterota
Campylobacter lari subsp. concheus LMG 11760 [CP007771]
408372
408446
+
Thr
GGT
[Ensembl]
¡û
>C151034186
CP007772
Campylobacterota
Campylobacter subantarcticus LMG 24374 [CP007772]
448509
448583
+
Thr
GGT
[Ensembl]
¡û
>C151034232
CP007773
Campylobacterota
Campylobacter subantarcticus LMG 24377 [CP007773]
426222
426296
+
Thr
GGT
[Ensembl]
¡û
>C151034278
CP007774
Campylobacterota
Campylobacter volucris LMG 24379 [CP007774]
397672
397746
+
Thr
GGT
[Ensembl]
¡û
>C151034321
CP007775
Campylobacterota
Campylobacter lari NCTC 11845 [CP007775]
441283
441357
+
Thr
GGT
[Ensembl]
¡û
>C151034367
CP007776
Campylobacterota
Campylobacter lari CCUG 22395 [CP007776]
408134
408208
+
Thr
GGT
[Ensembl]
¡û
>C151034413
CP007777
Campylobacterota
Campylobacter lari RM16701 [CP007777]
405890
405964
+
Thr
GGT
[Ensembl]
¡û
>C151034456
CP007778
Campylobacterota
Campylobacter lari RM16712 [CP007778]
416348
416422
+
Thr
GGT
[Ensembl]
¡û
>C151081718
CP011372
Campylobacterota
Campylobacter lari Slaughter Beach [CP011372]
408896
408970
+
Thr
GGT
[Ensembl]
¡û
>W1710553087
FOHH01000013
Campylobacterota
Campylobacter lari subsp. lari [FOHH]
1127
1201
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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