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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.658369 (38 seq.)
>W131218294
ATXO01000005
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
72225
72151
-
Thr
CGT
[ENA]
¡û
>WENV180014142
FPIC01067263
[FPIC] soil metagenome; Soil
546
472
-
Thr
CGT
[ENA]
¢þ
>WENV181226074
OFDK01000018
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
93248
93322
+
Thr
CGT
[ENA]
¢þ
>WENV181285350
OFGS01000016
[OFGS] hot springs metagenome; Water and soil
43644
43570
-
Thr
CGT
[ENA]
¢þ
>WENV181408474
OGCH01003883
[OGCH] hot springs metagenome; hot springs
3131
3205
+
Thr
CGT
[ENA]
¢þ
>W09113792
ABYZ01000001
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
354669
354743
+
Thr
CGT
[ENA]
¡û
>C09100861
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
1124157
1124083
-
Thr
CGT
[Ensembl]
¡û
>W1911155366
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
1306808
1306734
-
Thr
CGT
[ENA]
¡û
>W1911244058
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
464261
464187
-
Thr
CGT
[ENA]
¡û
>W1911244106
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
843752
843678
-
Thr
CGT
[ENA]
¡û
>W1911244147
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
1396714
1396640
-
Thr
CGT
[ENA]
¡û
>W1911244183
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
1696047
1696121
+
Thr
CGT
[ENA]
¡û
>W1911244215
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
1103380
1103454
+
Thr
CGT
[ENA]
¡û
>W1911572546
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
1635841
1635915
+
Thr
CGT
[ENA]
¡û
>W1911572600
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
2103115
2103041
-
Thr
CGT
[ENA]
¡û
>W1911572641
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
1735588
1735662
+
Thr
CGT
[ENA]
¡û
>W1810052251
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
1189637
1189711
+
Thr
CGT
[ENA]
¡û
>W1810071899
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
1678694
1678768
+
Thr
CGT
[ENA]
¡û
>W1810071948
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
2696385
2696459
+
Thr
CGT
[ENA]
¡û
>W1810072002
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
2027543
2027469
-
Thr
CGT
[ENA]
¡û
>W1810368027
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
1890568
1890494
-
Thr
CGT
[ENA]
¡û
>C10103646
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
1611255
1611329
+
Thr
CGT
[Ensembl]
¡û
>C11105216
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1739397
1739471
+
Thr
CGT
[Ensembl]
¡û
>C11105408
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
1081445
1081371
-
Thr
CGT
[Ensembl]
¡û
>C11105441
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
1832517
1832591
+
Thr
CGT
[Ensembl]
¡û
>C11105502
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
509552
509478
-
Thr
CGT
[Ensembl]
¡û
>W11139381
AEKB01000005
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
56723
56649
-
Thr
CGT
[ENA]
¡û
>W11139405
AEKC01000001
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
201531
201605
+
Thr
CGT
[ENA]
¡û
>W11139469
AEKD01000016
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
40766
40840
+
Thr
CGT
[ENA]
¡û
>W1511564066
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
1246716
1246642
-
Thr
CGT
[ENA]
¡û
>W1710603749
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
2178173
2178247
+
Thr
CGT
[ENA]
¡û
>W1710603847
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
279106
279032
-
Thr
CGT
[ENA]
¡û
>W1710603934
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
1226814
1226740
-
Thr
CGT
[ENA]
¡û
>W1710605097
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
291067
290993
-
Thr
CGT
[ENA]
¡û
>W1710609671
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
2096816
2096890
+
Thr
CGT
[ENA]
¡û
>W1710609726
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
1363685
1363611
-
Thr
CGT
[ENA]
¡û
>W1710609778
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
1397498
1397424
-
Thr
CGT
[ENA]
¡û
>W1710609824
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
1388636
1388562
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK