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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.658401 (46 seq.)
>W131108951
APGP01000053
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
48435
48361
-
Cys
GCA
[ENA]
¡û
>W131218331
ATXO01000022
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
15567
15641
+
Cys
GCA
[ENA]
¡û
>C006899
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
1020792
1020866
+
Cys
GCA
[Ensembl]
¡û
>WENV180014149
FPIC01068129
[FPIC] soil metagenome; Soil
56
130
+
Cys
GCA
[ENA]
¢þ
>WENV180037960
FVAA012122733
[FVAA] soil metagenome; Soil
52
126
+
Cys
GCA
[ENA]
¢þ
>WENV181226083
OFDK01000020
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
69084
69010
-
Cys
GCA
[ENA]
¢þ
>WENV181285481
OFGS01000862
[OFGS] hot springs metagenome; Water and soil
1253
1327
+
Cys
GCA
[ENA]
¢þ
>WENV181285504
OFGS01001181
[OFGS] hot springs metagenome; Water and soil
1849
1775
-
Cys
GCA
[ENA]
¢þ
>C191131127
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
2126492
2126418
-
Cys
GCA
-
¡û
>W09104554
AALW01000061
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
273
199
-
Cys
GCA
[ENA]
¡û
>W09113821
ABYZ01000004
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
170496
170422
-
Cys
GCA
[ENA]
¡û
>C09100828
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
844124
844198
+
Cys
GCA
[Ensembl]
¡û
>W1911155331
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
1026778
1026852
+
Cys
GCA
[ENA]
¡û
>W1911244017
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
184229
184303
+
Cys
GCA
[ENA]
¡û
>W1911244069
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
572971
573045
+
Cys
GCA
[ENA]
¡û
>W1911244119
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
1125932
1126006
+
Cys
GCA
[ENA]
¡û
>W1911244196
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
1976078
1976004
-
Cys
GCA
[ENA]
¡û
>W1911244250
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
1383412
1383338
-
Cys
GCA
[ENA]
¡û
>W1911572559
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
1915872
1915798
-
Cys
GCA
[ENA]
¡û
>W1911572583
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
1821481
1821555
+
Cys
GCA
[ENA]
¡û
>W1911572654
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
2006365
2006291
-
Cys
GCA
[ENA]
¡û
>W1810052273
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
1460418
1460344
-
Cys
GCA
[ENA]
¡û
>W1810071912
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
1960343
1960269
-
Cys
GCA
[ENA]
¡û
>W1810071968
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
74279
74205
-
Cys
GCA
[ENA]
¡û
>W1810071984
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
1747525
1747599
+
Cys
GCA
[ENA]
¡û
>W1810368004
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
1610536
1610610
+
Cys
GCA
[ENA]
¡û
>C10103631
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
802569
802643
+
Cys
GCA
[Ensembl]
¡û
>C11105227
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1970905
1970831
-
Cys
GCA
[Ensembl]
¡û
>C11105393
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
2028508
2028434
-
Cys
GCA
[Ensembl]
¡û
>C11105452
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
2066366
2066292
-
Cys
GCA
[Ensembl]
¡û
>C11105466
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
462269
462343
+
Cys
GCA
[Ensembl]
¡û
>C11105850
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
696802
696876
+
Cys
GCA
[Ensembl]
¡û
>W11139386
AEKB01000006
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
14660
14734
+
Cys
GCA
[ENA]
¡û
>W11139415
AEKC01000009
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
33370
33444
+
Cys
GCA
[ENA]
¡û
>W11139486
AEKD01000045
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
5091
5017
-
Cys
GCA
[ENA]
¡û
>W1511563948
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
1046823
1046897
+
Cys
GCA
[ENA]
¡û
>W1511564018
LACN01000009
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
20030
20104
+
Cys
GCA
[ENA]
¡û
>W1511564078
LACO01000002
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
104183
104109
-
Cys
GCA
[ENA]
¡û
>W1710603760
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
2459823
2459749
-
Cys
GCA
[ENA]
¡û
>W1710603821
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
2919015
2919089
+
Cys
GCA
[ENA]
¡û
>W1710603899
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
946781
946855
+
Cys
GCA
[ENA]
¡û
>W1710605060
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
9418
9492
+
Cys
GCA
[ENA]
¡û
>W1710609682
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
2378466
2378392
-
Cys
GCA
[ENA]
¡û
>W1710609713
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
1083654
1083728
+
Cys
GCA
[ENA]
¡û
>W1710609751
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
1115849
1115923
+
Cys
GCA
[ENA]
¡û
>W1710609796
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
1108605
1108679
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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