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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.658412 (9 seq.)
>WENV180314997
OBKH01001696
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
3
78
+
Ala
TGC
[ENA]
¡û
>WENV170660184
JXWT01023923
[JXWT] soil metagenome; rice field; elevated CO2 plus elevated temperature
766
691
-
Ala
TGC
[ENA]
¡û
>C151038496
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
1797
1872
+
Ala
TGC
[Ensembl]
¡û
>C151038498
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
605486
605561
+
Ala
TGC
[Ensembl]
¡û
>C151038526
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
1640371
1640446
+
Ala
TGC
[Ensembl]
¡û
>C151038541
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
2076125
2076200
+
Ala
TGC
[Ensembl]
¡û
>C151038560
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
5102487
5102562
+
Ala
TGC
[Ensembl]
¡û
>C151038562
CP008852
Bacillota
Pelosinus sp. UFO1 [CP008852]
5108077
5108152
+
Ala
TGC
[Ensembl]
¡û
>W1710568608
FOTS01000064
Bacillota
Pelosinus propionicus DSM 13327 [FOTS]
24251
24176
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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