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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.658613 (20 seq.)
>W1711352288
MDDB01000004
Bacillota
Moorella thermoacetica [MDDB]
131277
131351
+
Gly
GCC
[ENA]
¡û
>W1711352303
MDDC01000001
Bacillota
Moorella thermoacetica [MDDC]
85216
85290
+
Gly
GCC
[ENA]
¡û
>W1711352383
MDDD01000008
Bacillota
Moorella thermoacetica [MDDD]
155477
155403
-
Gly
GCC
[ENA]
¡û
>W1711352443
MDDE01000007
Bacillota
Moorella thermoacetica [MDDE]
108340
108266
-
Gly
GCC
[ENA]
¡û
>W1711428556
MIHH01000009
Bacillota
Moorella thermoacetica [MIHH]
64920
64846
-
Gly
GCC
[ENA]
¡û
>W1711428587
MIIF01000005
Bacillota
Moorella thermoacetica [MIIF]
89102
89028
-
Gly
GCC
[ENA]
¡û
>C171055185
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
704464
704538
+
Gly
GCC
-
¡û
>C171058951
CP017237
Bacillota
Moorella thermoacetica DSM 103284 [CP017237]
467139
467213
+
Gly
GCC
-
¡û
>C014170
CP000232
Bacillota
Moorella thermoacetica [CP000232]
545895
545969
+
Gly
GCC
[Ensembl]
¡û
>W141229811
BARR01000033
Bacillota
Moorella thermoacetica Y72 [BARR]
37581
37655
+
Gly
GCC
[ENA]
¡û
>WENV170561890
CZCB01000304
[CZCB] anaerobic digester metagenome; anaerobic digester
64185
64259
+
Gly
GCC
[ENA]
¢þ
>WENV170683711
LFRM01000950
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
23410
23484
+
Gly
GCC
[ENA]
¢þ
>WENV170723422
LSQX01267795
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3990
4064
+
Gly
GCC
[ENA]
¢þ
>WENV170968042
MTKW01005657
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
52872
52946
+
Gly
GCC
[ENA]
¢þ
>C191073427
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
552618
552692
+
Gly
GCC
-
¡û
>W09100950
AADT03000032
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
21589
21515
-
Gly
GCC
[ENA]
¡û
>C151094356
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
460204
460278
+
Gly
GCC
-
¡û
>C151094406
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
544091
544165
+
Gly
GCC
-
¡û
>W1610606283
LFST01000001
Bacillota
Candidatus Fermentithermobacillaceae bacterium DTU015 DTU015 [LFST]
23410
23484
+
Gly
GCC
[ENA]
¡û
>W1710727570
LFST01000001
Bacillota
Candidatus Fermentithermobacillaceae bacterium DTU015 DTU015 [LFST]
23410
23484
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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