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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659388 (57 seq.)
>W1711283087
LZOF01000077
Spirochaetota
Brachyspira hampsonii [LZOF]
18007
17933
-
Gly
TCC
[ENA]
¡û
>W1711283099
LZOG01000119
Spirochaetota
Brachyspira hampsonii [LZOG]
14425
14499
+
Gly
TCC
[ENA]
¡û
>W1711307485
MAOX01000011
Spirochaetota
Brachyspira hyodysenteriae [MAOX]
11523
11449
-
Gly
TCC
[ENA]
¡û
>W1711307501
MAOY01000001
Spirochaetota
Brachyspira hyodysenteriae [MAOY]
371451
371377
-
Gly
TCC
[ENA]
¡û
>W1711351564
MDCO01000012
Spirochaetota
Brachyspira hampsonii [MDCO]
635243
635317
+
Gly
TCC
[ENA]
¡û
>W1711507043
MKXF01000008
Spirochaetota
Brachyspira hyodysenteriae [MKXF]
23314
23240
-
Gly
TCC
[ENA]
¡û
>W131093657
AOMM01000390
Spirochaetota
Brachyspira hampsonii 30599 [AOMM]
5195
5269
+
Gly
TCC
[ENA]
¡û
>W131182385
ARQI01000106
Spirochaetota
Brachyspira innocens ATCC 29796 [ARQI]
256
328
+
Gly
TCC
[ENA]
¡û
>W131184500
ARSY01000041
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 [ARSY]
61639
61565
-
Gly
TCC
[ENA]
¡û
>WENV180116969
OARB01001025
[OARB] human gut metagenome; ENVO:feces
259
185
-
Gly
TCC
[ENA]
¢þ
>WENV180117127
OARC01033178
[OARC] human gut metagenome; ENVO:feces
140
69
-
Gly
TCC
[ENA]
¢þ
>WENV180117715
OARM01000016
[OARM] human gut metagenome; ENVO:feces
8051
7977
-
Gly
TCC
[ENA]
¢þ
>W141037621
ALNZ01000006
Spirochaetota
Brachyspira hampsonii 30446 [ALNZ]
81689
81763
+
Gly
TCC
[ENA]
¡û
>WENV180404921
OBSA01090439
[OBSA] human gut metagenome; ENVO:feces
42
113
+
Gly
TCC
[ENA]
¢þ
>WENV181666435
OGOJ01077994
[OGOJ] human gut metagenome; faeces
155
226
+
Gly
TCC
[ENA]
¢þ
>WENV181705220
OGPK01004003
[OGPK] human gut metagenome; faeces
6858
6929
+
Gly
TCC
[ENA]
¢þ
>WENV182964689
OKWR01006248
[OKWR] human gut metagenome; human gut
4236
4165
-
Gly
TCC
[ENA]
¢þ
>WENV183385410
OLYN01086344
[OLYN] human gut metagenome; feces
495
424
-
Gly
TCC
[ENA]
¢þ
>WENV183424409
OMBG01062015
[OMBG] human gut metagenome; feces
29
100
+
Gly
TCC
[ENA]
¢þ
>WENV183641143
OQVL01021869
[OQVL] human gut metagenome; human gut
2542
2471
-
Gly
TCC
[ENA]
¢þ
>WENV183642357
OQVN01001704
[OQVN] human gut metagenome; human gut
4053
3982
-
Gly
TCC
[ENA]
¢þ
>WENV183648358
OQVS01013522
[OQVS] human gut metagenome; human gut
2999
2928
-
Gly
TCC
[ENA]
¢þ
>WENV183651710
OQVU01002694
[OQVU] human gut metagenome; human gut
4485
4556
+
Gly
TCC
[ENA]
¢þ
>WENV183653277
OQVZ01011954
[OQVZ] human gut metagenome; human gut
850
779
-
Gly
TCC
[ENA]
¢þ
>C181038068
CP019600
Spirochaetota
Brachyspira hyodysenteriae BH718 [CP019600]
2030614
2030688
+
Gly
TCC
-
¡û
>C191016994
CP019914
Spirochaetota
Brachyspira hampsonii NSH-16 [CP019914]
1882811
1882737
-
Gly
TCC
-
¡û
>W09108434
ABTG01000004
Spirochaetota
Brachyspira murdochii DSM 12563 [ABTG]
36095
36023
-
Gly
TCC
[ENA]
¡û
>W1910000025
AFQM01000038
Spirochaetota
Brachyspira pilosicoli SP16 [AFQM]
41869
41943
+
Gly
TCC
[ENA]
¡û
>C09102339
CP001357
Spirochaetota
Brachyspira hyodysenteriae WA1 WA1; ATCC 49526 [CP001357]
2271207
2271281
+
Gly
TCC
[Ensembl]
¡û
>W1910569124
JJMJ01000016
Spirochaetota
Brachyspira murdochii D13-03603F2 [JJMJ]
27875
27947
+
Gly
TCC
[ENA]
¡û
>W1910574889
JQIU01000008
Spirochaetota
Brachyspira sp. G79 [JQIU]
1991727
1991655
-
Gly
TCC
[ENA]
¡û
>C10101957
CP001959
Spirochaetota
Brachyspira murdochii DSM 12563 [CP001959]
1567019
1566947
-
Gly
TCC
[Ensembl]
¡û
>C10101973
CP002025
Spirochaetota
Brachyspira pilosicoli 95/1000 [CP002025]
832122
832196
+
Gly
TCC
[Ensembl]
¡û
>W1510641491
CVLB01000001
Spirochaetota
Brachyspira suanatina AN4859/03 [CVLB]
42661
42735
+
Gly
TCC
[ENA]
¡û
>W1511506933
JXNA01000012
Spirochaetota
Brachyspira hyodysenteriae 865 [JXNA]
20607
20681
+
Gly
TCC
[ENA]
¡û
>W1511506962
JXNB01000015
Spirochaetota
Brachyspira hyodysenteriae FMV89.3323 [JXNB]
104244
104318
+
Gly
TCC
[ENA]
¡û
>W1511506995
JXNC01000008
Spirochaetota
Brachyspira hyodysenteriae NX [JXNC]
43053
43127
+
Gly
TCC
[ENA]
¡û
>W1511507054
JXND01000094
Spirochaetota
Brachyspira hyodysenteriae B204 [JXND]
113182
113108
-
Gly
TCC
[ENA]
¡û
>W1511507080
JXNE01000074
Spirochaetota
Brachyspira hyodysenteriae B6933 [JXNE]
112183
112109
-
Gly
TCC
[ENA]
¡û
>W1511507109
JXNF01000063
Spirochaetota
Brachyspira hyodysenteriae B78 [JXNF]
243321
243247
-
Gly
TCC
[ENA]
¡û
>W1511507121
JXNG01000009
Spirochaetota
Brachyspira hyodysenteriae B8044 [JXNG]
156088
156162
+
Gly
TCC
[ENA]
¡û
>W1511507181
JXNH01000085
Spirochaetota
Brachyspira hyodysenteriae G21 [JXNH]
178413
178487
+
Gly
TCC
[ENA]
¡û
>W1511507196
JXNI01000051
Spirochaetota
Brachyspira hyodysenteriae G44 [JXNI]
20426
20500
+
Gly
TCC
[ENA]
¡û
>W1511507245
JXNJ01000039
Spirochaetota
Brachyspira hyodysenteriae FM88.90 [JXNJ]
86800
86874
+
Gly
TCC
[ENA]
¡û
>W1511507250
JXNK01000010
Spirochaetota
Brachyspira hyodysenteriae NSW15 [JXNK]
20491
20565
+
Gly
TCC
[ENA]
¡û
>W1511507292
JXNL01000051
Spirochaetota
Brachyspira hyodysenteriae NSW5 [JXNL]
1513
1439
-
Gly
TCC
[ENA]
¡û
>W1511507326
JXNM01000045
Spirochaetota
Brachyspira hyodysenteriae Q17 [JXNM]
28255
28181
-
Gly
TCC
[ENA]
¡û
>W1511507364
JXNN01000045
Spirochaetota
Brachyspira hyodysenteriae ST190 [JXNN]
130669
130743
+
Gly
TCC
[ENA]
¡û
>W1511507389
JXNO01000036
Spirochaetota
Brachyspira hyodysenteriae ST195 [JXNO]
40961
41035
+
Gly
TCC
[ENA]
¡û
>W1511507432
JXNP01000074
Spirochaetota
Brachyspira hyodysenteriae ST210 [JXNP]
338407
338333
-
Gly
TCC
[ENA]
¡û
>W1511507460
JXNQ01000048
Spirochaetota
Brachyspira hyodysenteriae ST265 [JXNQ]
20441
20515
+
Gly
TCC
[ENA]
¡û
>W1511507487
JXNR01000059
Spirochaetota
Brachyspira hyodysenteriae Vic2 [JXNR]
129435
129509
+
Gly
TCC
[ENA]
¡û
>W1511507502
JXNS01000001
Spirochaetota
Brachyspira hyodysenteriae WA100 [JXNS]
20499
20573
+
Gly
TCC
[ENA]
¡û
>C161092143
CP015910
Spirochaetota
Brachyspira hyodysenteriae ATCC 27164 B-78 [CP015910]
1446318
1446244
-
Gly
TCC
[Ensembl]
¡û
>C131001495
CP002873
Spirochaetota
Brachyspira pilosicoli P43/6/78 [CP002873]
2389014
2388940
-
Gly
TCC
[Ensembl]
¡û
>C131003822
CP003490
Spirochaetota
Brachyspira pilosicoli B2904 [CP003490]
2175499
2175573
+
Gly
TCC
[Ensembl]
¡û
>C131019661
HE793032
Spirochaetota
Brachyspira pilosicoli WesB [HE793032]
2293488
2293562
+
Gly
TCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK