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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659573 (4 seq.)
>W1711710774
MSZX01000007
Bacillota
Paenibacillus selenitireducens [MSZX]
113793
113720
-
Thr
CGT
[ENA]
¡û
>W1910831967
MYFO01000011
Bacillota
Paenibacillus sp. MEC069 [MYFO]
71888
71964
+
Thr
CGT
[ENA]
¡û
>C151075930
CP011058
Bacillota
Paenibacillus beijingensis DSM 24997 [CP011058]
1692785
1692710
-
Thr
CGT
[Ensembl]
¡û
>W2010922087
MYFO01000011
Bacillota
Paenibacillus sp. MEC069 [MYFO]
71888
71964
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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