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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659603 (17 seq.)
>W1711414397
MGZK01000168
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_55_20 [MGZK]
1372
1298
-
Val
GAC
[ENA]
¡û
>W1711414462
MGZM01000138
Thermodesulfobacteriota
Geobacteraceae bacterium GWF2_54_21 [MGZM]
1910
1984
+
Val
GAC
[ENA]
¡û
>C010000
CP000148
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [CP000148]
1579288
1579362
+
Val
GAC
[Ensembl]
¡û
>C010104
AE017180
Thermodesulfobacteriota
Geobacter sulfurreducens PCA [AE017180]
1662002
1662076
+
Val
GAC
[Ensembl]
¡û
>C017495
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
2491522
2491448
-
Val
GAC
[Ensembl]
¡û
>WENV180311833
OBJT01610225
[OBJT] soil metagenome; soil
113
187
+
Val
GAC
[ENA]
¢þ
>WENV170002529
AGTN01058993
[AGTN] bioreactor metagenome; poplar biomass
405
331
-
Val
GAC
[ENA]
¢þ
>WENV170003029
AGTN01202428
[AGTN] bioreactor metagenome; poplar biomass
460
386
-
Val
GAC
[ENA]
¢þ
>W09100210
AAAS03000002
Thermodesulfobacteriota
Geobacter metallireducens GS-15 [AAAS]
526571
526497
-
Val
GAC
[ENA]
¡û
>W09103548
AAJH01000020
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [AAJH]
48388
48314
-
Val
GAC
[ENA]
¡û
>C191000613
AP017912
Thermodesulfobacteriota
Geobacter sulfurreducens YM18 [AP017912]
1615281
1615355
+
Val
GAC
-
¡û
>SRA1013958
SRR023821.9241
Pru Toh Daeng peat swamp (SRP001114)
176
102
-
Val
GAC
[SRA]
>C10107446
CP002031
Thermodesulfobacteriota
Geobacter sulfurreducens KN400 [CP002031]
1631653
1631727
+
Val
GAC
[Ensembl]
¡û
>W1511501016
JXBL01000001
Thermodesulfobacteriota
Geobacter soli GSS01 [JXBL]
1716580
1716506
-
Val
GAC
[ENA]
¡û
>C161025459
CP010430
Thermodesulfobacteriota
Geobacter sulfurreducens AM-1 [CP010430]
4275953
4275879
-
Val
GAC
[Ensembl]
¡û
>C161080261
CP014963
Thermodesulfobacteriota
Geobacter anodireducens SD-1 [CP014963]
2061353
2061279
-
Val
GAC
-
¡û
>W121010707
AGJM01000001
Thermodesulfobacteriota
Geobacter metallireducens RCH3 [AGJM]
311119
311045
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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