This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.659821 (36 seq.)
>W1711059938
LRXL01000001
Bacteroidota
Cochleicola gelatinilyticus LPB0005 [LRXL]
21753
21681
-
Thr
GGT
[ENA]
¡û
>W131223449
AUCB01000016
Bacteroidota
Arenibacter certesii DSM 19833 [AUCB]
19598
19524
-
Thr
GGT
[ENA]
¡û
>W131234632
AUKX01000014
Bacteroidota
Arenibacter latericius DSM 15913 [AUKX]
82753
82827
+
Thr
GGT
[ENA]
¡û
>W141079150
ATLG01000025
Bacteroidota
Cellulophaga baltica 4 [ATLG]
19077
19003
-
Thr
GGT
[ENA]
¡û
>W141079175
ATLH01000028
Bacteroidota
Cellulophaga baltica 13 [ATLH]
16075
16001
-
Thr
GGT
[ENA]
¡û
>W141079210
ATLI01000025
Bacteroidota
Cellulophaga baltica 18 [ATLI]
16671
16597
-
Thr
GGT
[ENA]
¡û
>W141079243
ATLJ01000033
Bacteroidota
Cellulophaga baltica NN016038 [ATLJ]
16752
16678
-
Thr
GGT
[ENA]
¡û
>WENV182591884
OJIO01011504
[OJIO] seawater metagenome; Sea water
181
253
+
Thr
GGT
[ENA]
¢þ
>WENV170130545
CENR01009465
[CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
128
202
+
Thr
GGT
[ENA]
¢þ
>WENV170664933
JYMV01021174
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
76967
77041
+
Thr
GGT
[ENA]
¢þ
>C181067236
CP022515
Bacteroidota
Arenibacter algicola SMS7 [CP022515]
22043
21971
-
Thr
GGT
-
¡û
>C181113305
CP025116
Bacteroidota
Nonlabens sp. MB-3u-79 [CP025116]
390988
390916
-
Thr
GGT
-
¡û
>W141807614
JPOO01000003
Bacteroidota
Arenibacter algicola [JPOO]
1353671
1353597
-
Thr
GGT
[ENA]
¡û
>W141812198
JPZT01000004
Bacteroidota
Altibacter lentus [JPZT]
1115957
1115883
-
Thr
GGT
[ENA]
¡û
>W1810118437
PHQQ01000023
Bacteroidota
Arenibacter catalasegens P308H10 [PHQQ]
89154
89226
+
Thr
GGT
[ENA]
¡û
>W1810120888
PHTY01000001
Bacteroidota
Ulvibacter sp. MAR_2010_11 MAR_2010_11 Mar_2010_11 [PHTY]
1938198
1938270
+
Thr
GGT
[ENA]
¡û
>W1810144851
PIOB01000011
Bacteroidota
Arenibacter hampyeongensis JCM 17788 [PIOB]
112731
112803
+
Thr
GGT
[ENA]
¡û
>W1810659332
QJJZ01000008
Bacteroidota
Arenibacter sp. ARW7G5Y1 [QJJZ]
206145
206217
+
Thr
GGT
[ENA]
¡û
>W1810693680
QLLN01000010
Bacteroidota
Arenibacter echinorum DSM 23522 [QLLN]
92227
92299
+
Thr
GGT
[ENA]
¡û
>W1810735850
QOLC01000106
Bacteroidota
Candidatus Ulvibacter alkanivorans Bin25-node4 [QOLC]
4256
4184
-
Thr
GGT
[ENA]
¡û
>W1810914348
QVON01000004
Bacteroidota
Arenibacter sp. P308M17 [QVON]
27071
26999
-
Thr
GGT
[ENA]
¡û
>C151061195
CP009887
Bacteroidota
Cellulophaga baltica NN016038 [CP009887]
2122677
2122751
+
Thr
GGT
[Ensembl]
¡û
>C151062870
CP009976
Bacteroidota
Cellulophaga baltica 18 [CP009976]
2132387
2132461
+
Thr
GGT
[Ensembl]
¡û
>C11104713
CP002453
Bacteroidota
Cellulophaga algicola DSM 14237 [CP002453]
2691028
2691102
+
Thr
GGT
[Ensembl]
¡û
>W1511320938
JQCT01000020
Bacteroidota
Cellulophaga sp. E6(2014) E6[2014] [JQCT]
16310
16236
-
Thr
GGT
[ENA]
¡û
>W1511433238
JUHB01000001
Bacteroidota
Cellulophaga sp. Hel_I_12 [JUHB]
3538700
3538774
+
Thr
GGT
[ENA]
¡û
>C161000298
AP014548
Bacteroidota
Nonlabens marinus S1-08 [AP014548]
1556098
1556170
+
Thr
GGT
[Ensembl]
¡û
>C161027975
CP010535
Bacteroidota
Sediminicola sp. YIK13 [CP010535]
191299
191371
+
Thr
GGT
[Ensembl]
¡û
>W1610082700
BDGL01000023
Bacteroidota
Arenibacter sp. NBRC 103722 C-21 [BDGL]
31901
31827
-
Thr
GGT
[ENA]
¡û
>W1610900915
LRXL01000001
Bacteroidota
Cochleicola gelatinilyticus LPB0005 [LRXL]
21753
21681
-
Thr
GGT
[ENA]
¡û
>W1710081874
BDGL01000023
Bacteroidota
Arenibacter sp. NBRC 103722 C-21 [BDGL]
31901
31827
-
Thr
GGT
[ENA]
¡û
>W1710514697
FNBD01000013
Bacteroidota
Cellulophaga baltica [FNBD]
89730
89804
+
Thr
GGT
[ENA]
¡û
>W1710583585
FQUX01000006
Bacteroidota
Arenibacter palladensis [FQUX]
37305
37231
-
Thr
GGT
[ENA]
¡û
>W1710587904
FQYX01000015
Bacteroidota
Arenibacter nanhaiticus [FQYX]
21668
21594
-
Thr
GGT
[ENA]
¡û
>W1710606142
FWXO01000001
Bacteroidota
Cellulophaga tyrosinoxydans [FWXO]
27419
27345
-
Thr
GGT
[ENA]
¡û
>W1710608035
FXAO01000005
Bacteroidota
Arenibacter troitsensis [FXAO]
37111
37037
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK